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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA01G561380
Query referenceTK1151
LocationChr01:141170942-141181640 (-)
DescriptionSimilar to BHLH2: Transcription factor EGL1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_026444 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 20 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g09820 Transcription activator, when associated with MYB75/PAP1 or MYB90/PAP2. No verified direct reference in this release
At1g63650 Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2.
A network of redundant bHLH proteins functions in all TTG1-dependent pathways of Arabidopsis.2003 · DOI: 10.1242/dev.00681
The bHLH genes GLABRA3 (GL3) and ENHANCER OF GLABRA3 (EGL3) specify epidermal cell fate in the Arabidopsis root.2003 · DOI: 10.1242/dev.00880
The bHLH genes GL3 and EGL3 participate in an intercellular regulatory circuit that controls cell patterning in the Arabidopsis root epidermis.2005 · DOI: 10.1242/dev.01565

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0001708cell fate specificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.499; coverage=120.907; evalue=1.91e-120; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009813flavonoid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.462; coverage=102.564; evalue=3.68e-77; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009867jasmonic acid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009962regulation of flavonoid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.462; coverage=102.564; evalue=3.68e-77; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010026trichome differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010091trichome branchingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.499; coverage=120.907; evalue=1.91e-120; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010214seed coat developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.462; coverage=102.564; evalue=3.68e-77; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031542positive regulation of anthocyanin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.499; coverage=120.907; evalue=1.91e-120; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048316seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.462; coverage=102.564; evalue=3.68e-77; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048629trichome patterningBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.52; coverage=105.917; evalue=9.59e-74; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090628plant epidermal cell fate specificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000029regulation of proanthocyanidin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.462; coverage=102.564; evalue=3.68e-77; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035618root hairCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.52; coverage=105.917; evalue=9.59e-74; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.462; coverage=102.564; evalue=3.68e-77; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046983protein dimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G63650KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.476; coverage=112.229; evalue=5.27e-129UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G00480KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.52; coverage=105.917; evalue=9.59e-74UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G09820KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.462; coverage=102.564; evalue=3.68e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G41315KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.499; coverage=120.907; evalue=1.91e-120UniProtKB/Swiss-Prot DAT 2026 current_release