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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA01G539900
Query referenceTK1151
LocationChr01:135389698-135390883 (-)
DescriptionSimilar to CAP10A: Chlorophyll a-b binding protein CP24 10A%2C chloroplastic (Solanum lycopersicum OX%3D4081)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001403 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 14 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g19150 The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Efficient operation of NAD(P)H dehydrogenase requires supercomplex formation with photosystem I via minor LHCI in Arabidopsis.2009 · DOI: 10.1105/tpc.109.068791
Supercomplex formation with photosystem I is required for the stabilization of the chloroplast NADH dehydrogenase-like complex in Arabidopsis.2011 · DOI: 10.1104/pp.110.171264
At1g45474 The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Lhca5--an LHC-type protein associated with photosystem I.2004 · DOI: 10.1023/b:plan.0000040813.05224.94
Efficient operation of NAD(P)H dehydrogenase requires supercomplex formation with photosystem I via minor LHCI in Arabidopsis.2009 · DOI: 10.1105/tpc.109.068791
Supercomplex formation with photosystem I is required for the stabilization of the chloroplast NADH dehydrogenase-like complex in Arabidopsis.2011 · DOI: 10.1104/pp.110.171264

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.295; coverage=94.942; evalue=3.92e-35; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009416response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.594; coverage=99.611; evalue=9.13e-150; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009644response to high light intensityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.295; coverage=94.942; evalue=3.92e-35; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009645response to low light intensity stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.295; coverage=94.942; evalue=3.92e-35; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009768photosynthesis, light harvesting in photosystem IBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.594; coverage=99.611; evalue=9.13e-150; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.444; coverage=70.039; evalue=1.53e-36; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009522photosystem ICellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.444; coverage=70.039; evalue=1.53e-36; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009523photosystem IICellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.594; coverage=99.611; evalue=9.13e-150; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.594; coverage=99.611; evalue=9.13e-150; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009782photosystem I antenna complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.295; coverage=94.942; evalue=3.92e-35; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016168chlorophyll bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.594; coverage=99.611; evalue=9.13e-150; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031409pigment bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.295; coverage=94.942; evalue=3.92e-35; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.295; coverage=94.942; evalue=3.92e-35; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.444; coverage=70.039; evalue=1.53e-36; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G19150KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.444; coverage=70.039; evalue=1.53e-36UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G45474KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.295; coverage=94.942; evalue=3.92e-35UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:101256131KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=81.395; coverage=100.389; evalue=5.15e-147UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:101256629KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.594; coverage=99.611; evalue=9.13e-150UniProtKB/Swiss-Prot DAT 2026 current_release