Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA01G399800 |
|---|---|
| Query reference | TK1151 |
| Location | Chr01:99782290-99783124 (+) |
| Description | Similar to MTR4: DExH-box ATP-dependent RNA helicase DExH9 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_001312 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 39 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g06990 |
ATP-dependent RNA helicase that associates with the RNA exosome complex, with the cap binding complex (CBC) and with the NEXT- like complex. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000292 | RNA fragment catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.072; coverage=96.503; evalue=0.0; UniProt GO evidence=IC:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000460 | maturation of 5.8S rRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.762; coverage=96.503; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006401 | RNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.072; coverage=96.503; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.762; coverage=96.503; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016075 | rRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016076 | snRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.072; coverage=96.503; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031125 | rRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034475 | U4 snRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034476 | U5 snRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043634 | polyadenylation-dependent ncRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.484; coverage=96.503; evalue=0.0; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071028 | nuclear mRNA surveillance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IGI:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071031 | nuclear mRNA surveillance of mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071038 | TRAMP-dependent tRNA surveillance pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.484; coverage=96.503; evalue=0.0; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071042 | nuclear polyadenylation-dependent mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071051 | poly(A)-dependent snoRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140746 | siRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.484; coverage=96.503; evalue=0.0; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000176 | nuclear exosome (RNase complex) | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.762; coverage=96.503; evalue=0.0; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.072; coverage=96.503; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031499 | TRAMP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0062141 | nuclear exosome targeting complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.762; coverage=96.503; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071013 | catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.072; coverage=96.503; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.072; coverage=96.503; evalue=0.0; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003724 | RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=HDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008143 | poly(A) binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016491 | oxidoreductase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019843 | rRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034458 | 3'-5' RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G59760 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.793; coverage=100.3; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:23517 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.072; coverage=96.503; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:72198 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.762; coverage=96.503; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YJL050W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.258; coverage=96.803; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |