Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA01G028970 |
|---|---|
| Query reference | TK1151 |
| Location | Chr01:7442565-7450664 (-) |
| Description | Similar to SIGC: RNA polymerase sigma factor sigC (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_005624 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 18 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g53920 |
Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. | |
At1g08540 |
Required for the transition of plastids into chloroplasts by coordinating nuclear and chloroplastic genomes under light conditions. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006352 | DNA-templated transcription initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006399 | tRNA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.39; coverage=65.478; evalue=1.58e-63; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009658 | chloroplast organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.39; coverage=65.478; evalue=1.58e-63; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010114 | response to red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.39; coverage=65.478; evalue=1.58e-63; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.46; coverage=65.291; evalue=2.68e-50; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071482 | cellular response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071483 | cellular response to blue light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.46; coverage=65.291; evalue=2.68e-50; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090351 | seedling development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.46; coverage=65.291; evalue=2.68e-50; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2001141 | regulation of RNA biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.405; coverage=58.349; evalue=5.43e-51; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.46; coverage=65.291; evalue=2.68e-50; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903865 | sigma factor antagonist complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.405; coverage=58.349; evalue=5.43e-51; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003899 | DNA-directed RNA polymerase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016987 | sigma factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ana:all5263 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.405; coverage=58.349; evalue=5.43e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G08540 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.39; coverage=65.478; evalue=1.58e-63 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G36990 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.46; coverage=65.291; evalue=2.68e-50 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G53920 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.064; coverage=93.246; evalue=6.06e-118 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | syf:Synpcc7942_0649 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.235; coverage=55.91; evalue=1.32e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release |