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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_039111
Query referenceOH1004
LocationChr09:59462494-59470592 (+)
DescriptionSimilar to ISA3: Isoamylase 3%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_039111 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g09020 Involved in starch catabolism.
Evidence for distinct mechanisms of starch granule breakdown in plants.2006 · DOI: 10.1074/jbc.m513661200
Further evidence for the mandatory nature of polysaccharide debranching for the aggregation of semicrystalline starch and for overlapping functions of debranching enzymes in Arabidopsis leaves.2008 · DOI: 10.1104/pp.108.129379
Starch granule biosynthesis in Arabidopsis is abolished by removal of all debranching enzymes but restored by the subsequent removal of an endoamylase.2008 · DOI: 10.1105/tpc.108.063487
At2g39930 Involved in the trimming of pre-amylopectin chains. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0469400 Starch-debranching enzyme that plays a role in the degradation of transitory starch during the night in leaf blades, facilitates the formation of spherical amyloplasts containing compound granules in the endosperm, and affects morphological characteristics of plastids.
Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis.2011 · DOI: 10.1093/pcp/pcr058
Os08g0520900 Starch-debranching enzyme involved in amylopectin biosynthesis in endosperm.
Complementation of sugary-1 phenotype in rice endosperm with the wheat isoamylase1 gene supports a direct role for isoamylase1 in amylopectin biosynthesis.2005 · DOI: 10.1104/pp.104.051359
Structural and enzymatic characterization of the isoamylase1 homo-oligomer and the isoamylase1-isoamylase2 hetero-oligomer from rice endosperm.2006 · DOI: 10.1007/s00425-006-0331-z
Functional diversity of isoamylase oligomers: the ISA1 homo-oligomer is essential for amylopectin biosynthesis in rice endosperm.2011 · DOI: 10.1104/pp.111.173435

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0005983starch catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.943; coverage=82.267; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009660amyloplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=70.183; coverage=79.798; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010021amylopectin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.599; coverage=77.553; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019252starch biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=70.183; coverage=79.798; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009501amyloplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=70.183; coverage=79.798; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.943; coverage=82.267; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009569chloroplast starch grainCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.943; coverage=82.267; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.943; coverage=82.267; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010368chloroplast isoamylase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.599; coverage=77.553; evalue=0.0; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043033isoamylase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.384; coverage=77.217; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019156isoamylase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.943; coverage=82.267; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G39930KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.634; coverage=79.686; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G09020KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.943; coverage=82.267; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os08g0520900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.384; coverage=77.217; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os09g0469400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=70.183; coverage=79.798; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:542318KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.599; coverage=77.553; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release