Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_036978`
Query reference	OH1004
Location	Chr08:51168643-51170811 (-)
Description	Similar to CSP41A: Chloroplast stem-loop binding protein of 41 kDa a%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_036978 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 34 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63140`	Binds and cleaves RNA, particularly in stem-loops.	Arabidopsis thaliana mutants reveal a role for CSP41a and CSP41b, two ribosome-associated endonucleases, in chloroplast ribosomal RNA metabolism.2008 · DOI: 10.1007/s11103-008-9328-2 The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis.2009 · DOI: 10.1007/s11103-008-9436-z
`At1g09340`	Binds and cleaves RNA, particularly in stem-loops.	ABA-responsive RNA-binding proteins are involved in chloroplast and stromule function in Arabidopsis seedlings.2006 · DOI: 10.1007/s00425-006-0282-4 Arabidopsis thaliana mutants reveal a role for CSP41a and CSP41b, two ribosome-associated endonucleases, in chloroplast ribosomal RNA metabolism.2008 · DOI: 10.1007/s11103-008-9328-2 The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis.2009 · DOI: 10.1007/s11103-008-9436-z Identification of a novel heteroglycan-interacting protein, HIP 1.3, from Arabidopsis thaliana.2011 · DOI: 10.1016/j.jplph.2010.09.008 Plastid encoded RNA polymerase activity and expression of photosynthesis genes required for embryo and seed development in Arabidopsis.2014 · DOI: 10.3389/fpls.2014.00385

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000272	polysaccharide catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005996	monosaccharide metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006364	rRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009611	response to wounding	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032544	plastid translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042631	cellular response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045727	positive regulation of translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000325	plant-type vacuole	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000427	plastid-encoded plastid RNA polymerase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005576	extracellular region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005777	peroxisome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005840	ribosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009506	plasmodesma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009534	chloroplast thylakoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009579	thylakoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009941	chloroplast envelope	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010287	plastoglobule	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010319	stromule	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048046	apoplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008266	poly(U) RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010297	heteropolysaccharide binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019843	rRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G09340	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.202; coverage=83.582; evalue=2.2e-63	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G63140	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.432; coverage=84.08; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release