Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_036539 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:44178121-44179426 (-) |
| Description | Similar to At3g47120: Zinc finger CCCH domain-containing protein 42 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_036539 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g47120 |
Zinc finger CCCH domain-containing protein 42. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os03g0826400 |
Zinc finger CCCH domain-containing protein 25. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903241 | U2-type prespliceosome assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.789; coverage=43.929; evalue=4.29e-55; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.789; coverage=43.929; evalue=3.51e-56; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005681 | spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.789; coverage=43.929; evalue=3.51e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005686 | U2 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.789; coverage=43.929; evalue=3.51e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.789; coverage=43.929; evalue=3.51e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031965 | nuclear membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.789; coverage=43.929; evalue=3.51e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071005 | U2-type precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.789; coverage=43.929; evalue=3.51e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071006 | U2-type catalytic step 1 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.789; coverage=43.929; evalue=3.51e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071011 | precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071018 | U12-type catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.789; coverage=43.929; evalue=3.51e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.569; coverage=72.857; evalue=1.68e-95; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G47120 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.09; coverage=63.571; evalue=3.18e-101 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0826400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.569; coverage=72.857; evalue=1.68e-95 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:51634 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.789; coverage=43.929; evalue=4.29e-55 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:209003 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.789; coverage=43.929; evalue=3.51e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:367930 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.824; coverage=48.571; evalue=4.54e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release |