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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_035528
Query referenceOH1004
LocationChr08:24168077-24169926 (+)
DescriptionSimilar to MYB52: Transcription factor MYB52 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035528 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 28 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g17950 Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought.
A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325
Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.2013 · DOI: 10.3389/fpls.2013.00189
At1g73410 Transcription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers.
A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325
At1g69560 Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning.
LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis.2009 · DOI: 10.1242/dev.031971
At5g17800 Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root.
MYB56 encoding a R2R3 MYB transcription factor regulates seed size in Arabidopsis thaliana.2013 · DOI: 10.1111/jipb.12094
Regulation of plant stem cell quiescence by a brassinosteroid signaling module.2014 · DOI: 10.1016/j.devcel.2014.05.020
Identification of Arabidopsis MYB56 as a novel substrate for CRL3BPM E3 ligases.2014 · DOI: 10.1093/mp/ssu120

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0274800 Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0001935endothelial cell proliferationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009742brassinosteroid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009834plant-type secondary cell wall biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010199organ boundary specification between lateral organs and the meristemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.982; coverage=33.851; evalue=2.66e-58; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048579negative regulation of long-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051782negative regulation of cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071367cellular response to brassinosteroid stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071555cell wall organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080060integument developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080113regulation of seed growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901347negative regulation of secondary cell wall biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901348positive regulation of secondary cell wall biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1902074response to saltBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904961quiescent center organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000652regulation of secondary cell wall biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000978RNA polymerase II cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000981DNA-binding transcription factor activity, RNA polymerase II-specificMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.755; coverage=78.571; evalue=1.46e-77; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G17950KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.724; coverage=78.882; evalue=2.77e-82UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G69560KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.982; coverage=33.851; evalue=2.66e-58UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G73410KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.755; coverage=78.571; evalue=1.46e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G17800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.807; coverage=35.404; evalue=3.55e-56UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0274800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.577; coverage=34.472; evalue=2.11e-60UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4325181KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.577; coverage=34.472; evalue=2.11e-60UniProtKB/Swiss-Prot DAT 2026 current_release