Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_030965 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:125749880-125751198 (+) |
| Description | Similar to PNSL3: Photosynthetic NDH subunit of lumenal location 3%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_030965 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 17 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g01440 |
NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. | |
At4g05180 |
May participate in photosystem II assembly and stabilization. | |
At4g21280 |
May participate in photosystem II assembly and stabilization. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009767 | photosynthetic electron transport chain | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019684 | photosynthesis, light reaction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009344 | nitrite reductase complex [NAD(P)H] | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009534 | chloroplast thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009543 | chloroplast thylakoid lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=HDA:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.804; coverage=85.52; evalue=7.86e-20; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009579 | thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.804; coverage=85.52; evalue=7.86e-20; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009654 | photosystem II oxygen evolving complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019898 | extrinsic component of membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031977 | thylakoid lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.804; coverage=85.52; evalue=7.86e-20; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048046 | apoplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.804; coverage=85.52; evalue=7.86e-20; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.908; coverage=78.733; evalue=1.59e-19; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005509 | calcium ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009055 | electron transfer activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G01440 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.556; coverage=101.81; evalue=4.66e-74 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G05180 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.804; coverage=85.52; evalue=7.86e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G21280 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.908; coverage=78.733; evalue=1.59e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release |