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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_030552
Query referenceOH1004
LocationChr06:118458965-118466651 (+)
DescriptionSimilar to SPPA: Serine protease SPPA%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030552 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g73990 Serine protease that may be involved in the light-dependent degradation of antenna and photosystem II in chloroplasts.
Identification and characterization of SppA, a novel light-inducible chloroplast protease complex associated with thylakoid membranes.2001 · DOI: 10.1074/jbc.m100506200
Loss of chloroplast protease SPPA function alters high light acclimation processes in Arabidopsis thaliana L. (Heynh.).2009 · DOI: 10.1093/jxb/erp051
At1g18485 Pentatricopeptide repeat-containing protein At1g18485. No verified direct reference in this release
At4g21300 Pentatricopeptide repeat-containing protein At4g21300. No verified direct reference in this release
At3g63370 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At3g03580 Pentatricopeptide repeat-containing protein At3g03580. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.987; coverage=56.63; evalue=1.07e-142; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006465signal peptide processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009451RNA modificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.335; coverage=52.972; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009642response to light intensityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0; UniProt GO evidence=IEP:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031425chloroplast RNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.987; coverage=56.63; evalue=1.07e-142; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.163; coverage=51.012; evalue=5.06e-151; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.335; coverage=52.972; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004252serine-type endopeptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.335; coverage=52.972; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G18485KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.335; coverage=52.972; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G73990KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.773; coverage=41.346; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G03580KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.783; coverage=50.555; evalue=5.15e-138UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G63370KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.987; coverage=56.63; evalue=1.07e-142UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G21300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.163; coverage=51.012; evalue=5.06e-151UniProtKB/Swiss-Prot DAT 2026 current_release