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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_029590
Query referenceOH1004
LocationChr06:94924760-94926028 (+)
DescriptionSimilar to ISPF: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C chloroplastic (Catharanthus roseus OX%3D4058)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_029590 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g63970 Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 4-diphosphocytidyl-2C-methyl-D-erythritol 2- phosphate into 2C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP.
Functional evidence for the involvement of Arabidopsis IspF homolog in the nonmevalonate pathway of plastid isoprenoid biosynthesis.2006 · DOI: 10.1007/s00425-005-0140-9

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0680600 Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate into 2C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP (Probable).
A single nucleotide mutation of IspF gene involved in the MEP pathway for isoprenoid biosynthesis causes yellow-green leaf phenotype in rice.2018 · DOI: 10.1007/s11103-017-0668-7

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0015995chlorophyll biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=89.017; coverage=74.892; evalue=2.5e-112; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016114terpenoid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.529; coverage=103.03; evalue=1.68e-112; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016117carotenoid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=89.017; coverage=74.892; evalue=2.5e-112; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019288isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.529; coverage=103.03; evalue=1.68e-112; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=89.017; coverage=74.892; evalue=2.5e-112; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.529; coverage=103.03; evalue=1.68e-112; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00086852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.529; coverage=103.03; evalue=1.68e-112; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.529; coverage=103.03; evalue=1.68e-112; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G63970KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=89.017; coverage=74.892; evalue=2.5e-112UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbav:BAV1059KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.83; coverage=68.831; evalue=1.4e-51UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0680600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.259; coverage=100.433; evalue=2.48e-105UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGgwc:GWCH70_0087KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=51.592; coverage=67.965; evalue=1.3e-51UniProtKB/Swiss-Prot DAT 2026 current_release