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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_027875
Query referenceOH1004
LocationChr06:25372177-25374941 (-)
DescriptionSimilar to EER5: Enhanced ethylene response protein 5 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027875 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g19560 Involved in the regulation of ethylene response.
The eer5 mutation, which affects a novel proteasome-related subunit, indicates a prominent role for the COP9 signalosome in resetting the ethylene-signaling pathway in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2008.03521.x
Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin.2010 · DOI: 10.1111/j.1365-313x.2009.04048.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000973post-transcriptional tethering of RNA polymerase II gene DNA at nuclear peripheryBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006368transcription elongation by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006406mRNA export from nucleusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.252; coverage=100.725; evalue=1.01e-79; UniProt GO evidence=NAS:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009723response to ethyleneBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009873ethylene-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015031protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.252; coverage=100.725; evalue=1.01e-79; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016973poly(A)+ mRNA export from nucleusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045814negative regulation of gene expression, epigeneticBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.252; coverage=100.725; evalue=1.01e-79; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.252; coverage=100.725; evalue=1.01e-79; UniProt GO evidence=NAS:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048364root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.252; coverage=100.725; evalue=1.01e-79; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.252; coverage=100.725; evalue=1.01e-79; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.524; coverage=101.449; evalue=2.38e-72; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044615nuclear pore nuclear basketCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.252; coverage=100.725; evalue=1.01e-79; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070390transcription export complex 2Cellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003690double-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G19560KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.155; coverage=99.517; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:617943KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.524; coverage=101.449; evalue=2.38e-72UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:55795KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.252; coverage=100.725; evalue=1.01e-79UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:234069KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.772; coverage=100.725; evalue=7.54e-75UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:734284KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.474; coverage=98.792; evalue=4.54e-76UniProtKB/Swiss-Prot DAT 2026 current_release