Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_027842 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:24610862-24612249 (+) |
| Description | Similar to CFIS1: Pre-mRNA cleavage factor Im 25 kDa subunit 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_027842 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g29820 |
Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. | No verified direct reference in this release |
At4g25550 |
Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.256; coverage=88.636; evalue=3.49e-69; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.38; coverage=96.818; evalue=1.17e-98; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010608 | post-transcriptional regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031124 | mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.38; coverage=96.818; evalue=1.17e-98; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051262 | protein tetramerization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051290 | protein heterotetramerization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0110104 | mRNA alternative polyadenylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0180010 | co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000738 | positive regulation of stem cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.38; coverage=96.818; evalue=1.17e-98; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005813 | centrosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.256; coverage=88.636; evalue=3.49e-69; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005849 | mRNA cleavage factor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.38; coverage=96.818; evalue=1.17e-98; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042382 | paraspeckles | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035925 | mRNA 3'-UTR AU-rich region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.38; coverage=96.818; evalue=1.17e-98; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042826 | histone deacetylase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.38; coverage=96.818; evalue=1.17e-98; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G25550 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.256; coverage=88.636; evalue=3.49e-69 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G29820 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.38; coverage=96.818; evalue=1.17e-98 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:518859 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.737; coverage=86.364; evalue=9.44e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:11051 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.737; coverage=86.364; evalue=9.44e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100172645 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.737; coverage=86.364; evalue=9.44e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release |