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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_025928
Query referenceOH1004
LocationChr05:118646811-118647739 (-)
DescriptionSimilar to RSZ22A: Serine/arginine-rich splicing factor RSZ22A (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025928 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g24590 Probably involved in intron recognition and spliceosome assembly. No verified direct reference in this release
At4g31580 Sequence-specific RNA-binding protein probably involved in pre-mRNA splicing.
A novel family of plant splicing factors with a Zn knuckle motif: examination of RNA binding and splicing activities.1999 · DOI: 10.1023/a:1006129615846

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0187900 Involved in pre-mRNA splicing. No verified direct reference in this release
Os02g0610600 Involved in pre-mRNA splicing.
The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA.2006 · DOI: 10.1105/tpc.105.037069
Os02g0789400 Involved in pre-mRNA splicing. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000381regulation of alternative mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000398mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.0; coverage=104.167; evalue=7.94e-66; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008380RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67; UniProt GO evidence=NAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.0; coverage=104.167; evalue=7.94e-66; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005681spliceosomal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.0; coverage=104.167; evalue=7.94e-66; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005773vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.0; coverage=104.167; evalue=7.94e-66; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G24590KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.02; coverage=102.083; evalue=1.38e-67UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G31580KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.0; coverage=104.167; evalue=7.94e-66UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0610600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.968; coverage=114.062; evalue=6.16e-58UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0789400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=60.804; coverage=103.646; evalue=1.75e-57UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os06g0187900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.682; coverage=104.688; evalue=4.38e-61UniProtKB/Swiss-Prot DAT 2026 current_release