Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025483`
Query reference	OH1004
Location	Chr05:112444544-112449874 (+)
Description	Similar to GH3.10: Indole-3-acetic acid-amido synthetase GH3.10 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025483 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 30 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g03400`	Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin (By similarity).	DFL2, a new member of the Arabidopsis GH3 gene family, is involved in red light-specific hypocotyl elongation.2003 · DOI: 10.1093/pcp/pcg130
`At2g46370`	May catalyze conjugation of jasmonic acid to amino acids.	FIN219, an auxin-regulated gene, defines a link between phytochrome A and the downstream regulator COP1 in light control of Arabidopsis development.2000 · DOI: 10.1101/gad.14.15.1958 Jasmonic acid signaling modulates ozone-induced hypersensitive cell death.2000 · DOI: 10.1105/tpc.12.9.1633 Fumonisin B1-induced cell death in arabidopsis protoplasts requires jasmonate-, ethylene-, and salicylate-dependent signaling pathways.2000 · DOI: 10.1105/tpc.12.10.1823 Ozone-sensitive arabidopsis rcd1 mutant reveals opposite roles for ethylene and jasmonate signaling pathways in regulating superoxide-dependent cell death.2000 · DOI: 10.1105/tpc.12.10.1849 Roles of salicylic acid, jasmonic acid, and ethylene in cpr-induced resistance in arabidopsis.2000 · DOI: 10.1105/tpc.12.11.2175 Methyl jasmonate inhibition of root growth and induction of a leaf protein are decreased in an Arabidopsis thaliana mutant.1992 · DOI: 10.1073/pnas.89.15.6837 Jasmonate response locus JAR1 and several related Arabidopsis genes encode enzymes of the firefly luciferase superfamily that show activity on jasmonic, salicylic, and indole-3-acetic acids in an assay for adenylation.2002 · DOI: 10.1105/tpc.000885 Characterization of early, chitin-induced gene expression in Arabidopsis.2002 · DOI: 10.1094/mpmi.2002.15.9.963 An Arabidopsis mutant defective in jasmonate response is allelic to the auxin-signaling mutant axr1.2002 · DOI: 10.1104/pp.005272 Tandemly duplicated Arabidopsis genes that encode polygalacturonase-inhibiting proteins are regulated coordinately by different signal transduction pathways in response to fungal infection.2003 · DOI: 10.1105/tpc.005165 An investigation into the involvement of defense signaling pathways in components of the nonhost resistance of Arabidopsis thaliana to rust fungi also reveals a model system for studying rust fungal compatibility.2003 · DOI: 10.1094/mpmi.2003.16.5.398 Arabidopsis local resistance to Botrytis cinerea involves salicylic acid and camalexin and requires EDS4 and PAD2, but not SID2, EDS5 or PAD4.2003 · DOI: 10.1046/j.1365-313x.2003.01794.x Induced systemic resistance in Arabidopsis thaliana in response to root inoculation with Pseudomonas fluorescens CHA0.2003 · DOI: 10.1094/mpmi.2003.16.10.851 The oxylipin signal jasmonic acid is activated by an enzyme that conjugates it to isoleucine in Arabidopsis.2004 · DOI: 10.1105/tpc.104.023549 Volatile C6-aldehydes and Allo-ocimene activate defense genes and induce resistance against Botrytis cinerea in Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci122 Solar ultraviolet-B radiation alters the attractiveness of Arabidopsis plants to diamondback moths (Plutella xylostella L.): impacts on oviposition and involvement of the jasmonic acid pathway.2006 · DOI: 10.1007/s00442-006-0422-3 Glutathione S-transferase interacting with far-red insensitive 219 is involved in phytochrome A-mediated signaling in Arabidopsis.2007 · DOI: 10.1104/pp.106.094185 Rhizobacteria-induced priming in Arabidopsis is dependent on ethylene, jasmonic acid, and NPR1.2007 · DOI: 10.1094/mpmi-20-7-0759 The role of JAR1 in Jasmonoyl-L: -isoleucine production during Arabidopsis wound response.2008 · DOI: 10.1007/s00425-008-0694-4 Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity.2009 · DOI: 10.1073/pnas.0900701106 Enhanced defense responses in Arabidopsis induced by the cell wall protein fractions from Pythium oligandrum require SGT1, RAR1, NPR1 and JAR1.2009 · DOI: 10.1093/pcp/pcp044 A rapid wound signal activates the systemic synthesis of bioactive jasmonates in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2009.03924.x Involvement of salicylate and jasmonate signaling pathways in Arabidopsis interaction with Fusarium graminearum.2010 · DOI: 10.1094/mpmi-23-7-0861 Structural basis of jasmonate-amido synthetase FIN219 in complex with glutathione S-transferase FIP1 during the JA signal regulation.2017 · DOI: 10.1073/pnas.1609980114 A novel signaling pathway controlling induced systemic resistance in Arabidopsis.1998 · DOI: 10.1105/tpc.10.9.1571 Jasmonate signaling mutants of Arabidopsis are susceptible to the soil fungus Pythium irregulare.1998 · DOI: 10.1046/j.1365-313x.1998.00265.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0586200`	Catalyzes the synthesis of jasmonate-amino acid conjugates by adenylation.	Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling.2008 · DOI: 10.1111/j.1365-3040.2008.01790.x OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling.2011 · DOI: 10.1016/j.bbrc.2011.05.055 Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation.2013 · DOI: 10.1111/jipb.12057 OsJAR1 contributes mainly to biosynthesis of the stress-induced jasmonoyl-isoleucine involved in defense responses in rice.2013 · DOI: 10.1271/bbb.130272 Light induces jasmonate-isoleucine conjugation via OsJAR1-dependent and -independent pathways in rice.2014 · DOI: 10.1111/pce.12201 OsJAR1 is required for JA-regulated floret opening and anther dehiscence in rice.2014 · DOI: 10.1007/s11103-014-0212-y

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.041; coverage=98.99; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009416	response to light stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.824; coverage=100.505; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009585	red, far-red light phototransduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009611	response to wounding	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009627	systemic acquired resistance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009640	photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009694	jasmonic acid metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.663; coverage=100.0; evalue=0.0; UniProt GO evidence=IC:Gramene	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009753	response to jasmonic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010046	response to mycotoxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010193	response to ozone	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010224	response to UV-B	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0018117	protein adenylylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031348	negative regulation of defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071365	cellular response to auxin stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000030	regulation of response to red or far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000377	regulation of reactive oxygen species metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.824; coverage=100.505; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.824; coverage=100.505; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005773	vacuole	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.824; coverage=100.505; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.041; coverage=98.99; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016597	amino acid binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016881	acid-amino acid ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.824; coverage=100.505; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019899	enzyme binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070566	adenylyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070728	L-leucine binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080123	jasmonoyl-L-amino acid ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.041; coverage=98.99; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G46370	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.611; coverage=98.653; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G03400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.824; coverage=100.505; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os05g0586200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.663; coverage=100.0; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	nau:109207440	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.261; coverage=100.168; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release