Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025169`
Query reference	OH1004
Location	Chr05:107060179-107061147 (+)
Description	Similar to TCP15: Transcription factor TCP15 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025169 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69690`	Transcription factor involved the regulation of plant development.	TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2011.04674.x The Arabidopsis O-linked N-acetylglucosamine transferase SPINDLY interacts with class I TCPs to facilitate cytokinin responses in leaves and flowers.2012 · DOI: 10.1105/tpc.111.093518 The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity.2014 · DOI: 10.1111/tpj.12527 The ubiquitin receptors DA1, DAR1, and DAR2 redundantly regulate endoreduplication by modulating the stability of TCP14/15 in Arabidopsis.2015 · DOI: 10.1105/tpc.114.132274 TCP15 modulates cytokinin and auxin responses during gynoecium development in Arabidopsis.2015 · DOI: 10.1111/tpj.12992 Redox-Dependent Modulation of Anthocyanin Biosynthesis by the TCP Transcription Factor TCP15 during Exposure to High Light Intensity Conditions in Arabidopsis.2016 · DOI: 10.1104/pp.15.01016
`At1g58100`	Can specifically bind site II elements in the promoter region of PP438/PNM1.	An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation.2011 · DOI: 10.1105/tpc.110.081638
`At3g47620`	Transcription factor involved the regulation of plant development.	Transcription factor AtTCP14 regulates embryonic growth potential during seed germination in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2007.03308.x TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2011.04674.x Arabidopsis thaliana DOF6 negatively affects germination in non-after-ripened seeds and interacts with TCP14.2012 · DOI: 10.1093/jxb/err388 The Arabidopsis O-linked N-acetylglucosamine transferase SPINDLY interacts with class I TCPs to facilitate cytokinin responses in leaves and flowers.2012 · DOI: 10.1105/tpc.111.093518 The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity.2014 · DOI: 10.1111/tpj.12527 The ubiquitin receptors DA1, DAR1, and DAR2 redundantly regulate endoreduplication by modulating the stability of TCP14/15 in Arabidopsis.2015 · DOI: 10.1105/tpc.114.132274 Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.2017 · DOI: 10.1016/j.chom.2017.01.003 ORANGE Represses Chloroplast Biogenesis in Etiolated Arabidopsis Cotyledons via Interaction with TCP14.2019 · DOI: 10.1105/tpc.18.00290
`At1g72010`	Transcription factor TCP22.	No verified direct reference in this release
`At1g35560`	Transcription factor TCP23.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009735	response to cytokinin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=94.737; coverage=23.602; evalue=5.52e-42; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009739	response to gibberellin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=94.737; coverage=23.602; evalue=5.52e-42; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010029	regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=94.737; coverage=23.602; evalue=5.52e-42; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010229	inflorescence development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031347	regulation of defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=94.737; coverage=23.602; evalue=5.52e-42; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031540	regulation of anthocyanin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042023	DNA endoreduplication	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=94.737; coverage=23.602; evalue=5.52e-42; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048467	gynoecium development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=85.185; coverage=25.155; evalue=1.39e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051301	cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080086	stamen filament development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140964	intracellular auxin homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.524; coverage=26.087; evalue=6.49e-44; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=85.185; coverage=25.155; evalue=1.39e-41; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G35560	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=85.185; coverage=25.155; evalue=1.39e-41	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G58100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.524; coverage=26.087; evalue=6.49e-44	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G69690	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.609; coverage=107.143; evalue=6.19e-51	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G72010	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=87.5; coverage=24.845; evalue=1.63e-41	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G47620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=94.737; coverage=23.602; evalue=5.52e-42	UniProtKB/Swiss-Prot DAT 2026 current_release