Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025034`
Query reference	OH1004
Location	Chr05:104453422-104454357 (+)
Description	Similar to MTERF1: Transcription termination factor MTEF1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025034 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g03050`	Transcription termination factor required for plastid- specific rRNA accumulation and protein synthesis in plastids.	A mutation in the Arabidopsis mTERF-related plastid protein SOLDAT10 activates retrograde signaling and suppresses (1)O(2)-induced cell death.2009 · DOI: 10.1111/j.1365-313x.2009.03965.x
`At2g36000`	Transcription termination factor required for chloroplast gene expression and protein synthesis in chloroplasts.	Arabidopsis Seedling Lethal 1 Interacting With Plastid-Encoded RNA Polymerase Complex Proteins Is Essential for Chloroplast Development.2020 · DOI: 10.3389/fpls.2020.602782
`At4g14605`	Transcription termination factor required for processing and steady-state levels of plastid transcripts.	Arabidopsis MDA1, a nuclear-encoded protein, functions in chloroplast development and abiotic stress responses.2012 · DOI: 10.1371/journal.pone.0042924 mTERF5 Acts as a Transcriptional Pausing Factor to Positively Regulate Transcription of Chloroplast psbEFLJ.2019 · DOI: 10.1016/j.molp.2019.05.007
`At2g21710`	Transcription termination factor involved in processing of plastid transcripts (By similarity).	No verified direct reference in this release
`At5g55580`	Transcription termination factor required for processing and steady-state levels of plastid transcripts.	Mutations in the plant-conserved MTERF9 alter chloroplast gene expression, development and tolerance to abiotic stress in Arabidopsis thaliana.2015 · DOI: 10.1111/ppl.12307

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006353	DNA-templated transcription termination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.371; coverage=83.28; evalue=6.99e-99; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.22; coverage=65.916; evalue=2.35e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006970	response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.22; coverage=65.916; evalue=2.35e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.22; coverage=65.916; evalue=2.35e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.371; coverage=83.28; evalue=6.99e-99; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.22; coverage=65.916; evalue=2.35e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.371; coverage=83.28; evalue=6.99e-99; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042793	plastid transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.22; coverage=65.916; evalue=2.35e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048598	embryonic morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.975; coverage=76.527; evalue=6.83e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071452	cellular response to singlet oxygen	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.371; coverage=83.28; evalue=6.99e-99; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140899	plastid gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.975; coverage=76.527; evalue=6.83e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.371; coverage=83.28; evalue=6.99e-99; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009506	plasmodesma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.985; coverage=86.174; evalue=2.58e-18; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.371; coverage=83.28; evalue=6.99e-99; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.975; coverage=76.527; evalue=6.83e-45; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042644	chloroplast nucleoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.975; coverage=76.527; evalue=6.83e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001052	plastid PEP RNA polymerase core enzyme binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.975; coverage=76.527; evalue=6.83e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003676	nucleic acid binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.371; coverage=83.28; evalue=6.99e-99; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990837	sequence-specific double-stranded DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.22; coverage=65.916; evalue=2.35e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G03050	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.371; coverage=83.28; evalue=6.99e-99	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G21710	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.985; coverage=86.174; evalue=2.58e-18	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G36000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.975; coverage=76.527; evalue=6.83e-45	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G14605	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.22; coverage=65.916; evalue=2.35e-21	UniProtKB/Swiss-Prot DAT 2026 current_release