Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_024148 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:82396355-82408057 (-) |
| Description | Similar to SCC2: Sister chromatid cohesion protein SCC2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_024148 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 48 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g15540 |
Essential protein required for cell fate determination during embryogenesis. |
The plant adherin AtSCC2 is required for embryogenesis and sister-chromatid cohesion during meiosis in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2009.03845.x
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000070 | mitotic sister chromatid segregation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.88; coverage=48.513; evalue=6.55e-83; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007059 | chromosome segregation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007062 | sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007064 | mitotic sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008104 | intracellular protein localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010468 | regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019827 | stem cell population maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.88; coverage=48.513; evalue=6.55e-83; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034087 | establishment of mitotic sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034088 | maintenance of mitotic sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040018 | positive regulation of multicellular organism growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.88; coverage=48.513; evalue=6.55e-83; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045778 | positive regulation of ossification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.88; coverage=48.513; evalue=6.55e-83; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.88; coverage=48.513; evalue=6.55e-83; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045995 | regulation of embryonic development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048589 | developmental growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048638 | regulation of developmental growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051177 | meiotic sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051321 | meiotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060828 | regulation of canonical Wnt signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.107; coverage=48.513; evalue=4.12e-78; UniProt GO evidence=IMP:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070050 | neuron cellular homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.107; coverage=48.513; evalue=4.12e-78; UniProt GO evidence=IMP:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071169 | establishment of protein localization to chromatin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071481 | cellular response to X-ray | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140588 | chromatin looping | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990414 | replication-born double-strand break repair via sister chromatid exchange | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000775 | chromosome, centromeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.88; coverage=48.513; evalue=6.55e-83; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032039 | integrator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032116 | SMC loading complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070062 | extracellular exosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090694 | Scc2-Scc4 cohesin loading complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003714 | transcription corepressor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036033 | mediator complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042826 | histone deacetylase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IPI:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061775 | cohesin loader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070087 | chromo shadow domain binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=IPI:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140587 | chromatin loop anchoring activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.107; coverage=48.513; evalue=4.12e-78; UniProt GO evidence=IGI:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990841 | promoter-specific chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87; UniProt GO evidence=ISS:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G15540 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.796; coverage=99.945; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:794108 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.107; coverage=48.513; evalue=4.12e-78 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:25836 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=23.093; coverage=79.405; evalue=3.9e-87 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:71175 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.88; coverage=48.513; evalue=6.55e-83 | UniProtKB/Swiss-Prot DAT 2026 current_release |