Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_024045 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:78597409-78598952 (-) |
| Description | Similar to NAC002: NAC domain-containing protein 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_024045 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 33 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g01720 |
NAC domain-containing protein 2. | No verified direct reference in this release |
At5g08790 |
Involved in disease resistance response. |
The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02488.x Interaction of the Tobacco mosaic virus replicase protein with a NAC domain transcription factor is associated with the suppression of systemic host defenses.2009 · DOI: 10.1128/jvi.00941-09
|
At5g63790 |
May be involved in regulation of seed germination under flooding. | No verified direct reference in this release |
At1g77450 |
Transcriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0884300 |
Transcription activator that binds to the promoter of the stress response gene LEA19. |
Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice.2007 · DOI: 10.1111/j.1365-313x.2007.03168.x Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice.2008 · DOI: 10.1007/s11103-008-9309-5 The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice.2009 · DOI: 10.1111/j.1365-313x.2009.03908.x
|
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001666 | response to hypoxia | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.826; coverage=69.624; evalue=4.01e-83; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.806; coverage=73.387; evalue=2.2e-99; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008361 | regulation of cell size | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009409 | response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.667; coverage=72.581; evalue=1.1e-86; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009416 | response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009611 | response to wounding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.806; coverage=73.387; evalue=2.2e-99; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009620 | response to fungus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009744 | response to sucrose | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009751 | response to salicylic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009753 | response to jasmonic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.806; coverage=73.387; evalue=2.2e-99; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010099 | regulation of photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010150 | leaf senescence | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019760 | glucosinolate metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.826; coverage=69.624; evalue=4.01e-83; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.667; coverage=72.581; evalue=1.1e-86; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048364 | root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.667; coverage=72.581; evalue=1.1e-86; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071456 | cellular response to hypoxia | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.806; coverage=73.387; evalue=2.2e-99; UniProt GO evidence=HEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900057 | positive regulation of leaf senescence | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=60.538; coverage=59.946; evalue=1.03e-78; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900150 | regulation of defense response to fungus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.667; coverage=72.581; evalue=1.1e-86; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901002 | positive regulation of response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.667; coverage=72.581; evalue=1.1e-86; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902584 | positive regulation of response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.667; coverage=72.581; evalue=1.1e-86; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902890 | regulation of root hair elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=60.538; coverage=59.946; evalue=1.03e-78; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.806; coverage=73.387; evalue=2.2e-99; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.826; coverage=69.624; evalue=4.01e-83; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.806; coverage=73.387; evalue=2.2e-99; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001216 | DNA-binding transcription activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=60.538; coverage=59.946; evalue=1.03e-78; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.826; coverage=69.624; evalue=4.01e-83; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.806; coverage=73.387; evalue=2.2e-99; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019900 | kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.806; coverage=73.387; evalue=2.2e-99; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043424 | protein histidine kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.667; coverage=72.581; evalue=1.1e-86; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G01720 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.806; coverage=73.387; evalue=2.2e-99 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G77450 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=60.538; coverage=59.946; evalue=1.03e-78 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G08790 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.597; coverage=72.043; evalue=1.36e-84 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G63790 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.826; coverage=69.624; evalue=4.01e-83 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0884300 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.667; coverage=72.581; evalue=1.1e-86 | UniProtKB/Swiss-Prot DAT 2026 current_release |