Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021542 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:132180618-132181091 (+) |
| Description | Similar to LSH6: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021542 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 9 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g07090 |
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. | No verified direct reference in this release |
At5g58500 |
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. | No verified direct reference in this release |
At3g04510 |
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. | No verified direct reference in this release |
At2g42610 |
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. | No verified direct reference in this release |
At5g28490 |
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to continuous red (cR), far-red (cFR) and blue (cB) light in a phytochrome-dependent manner, at least during seedling development. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009299 | mRNA transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.143; coverage=89.172; evalue=2.57e-66; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009416 | response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.143; coverage=89.172; evalue=2.57e-66; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009637 | response to blue light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.443; coverage=94.904; evalue=1.99e-61; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009826 | unidimensional cell growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.443; coverage=94.904; evalue=1.99e-61; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010114 | response to red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.443; coverage=94.904; evalue=1.99e-61; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010218 | response to far red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.443; coverage=94.904; evalue=1.99e-61; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090698 | post-embryonic plant morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.143; coverage=89.172; evalue=2.57e-66; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.143; coverage=89.172; evalue=2.57e-66; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.143; coverage=89.172; evalue=2.57e-66; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G07090 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.143; coverage=89.172; evalue=2.57e-66 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G42610 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.963; coverage=85.987; evalue=3.94e-62 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G04510 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=85.987; evalue=1.42e-62 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G28490 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.443; coverage=94.904; evalue=1.99e-61 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G58500 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.889; coverage=85.987; evalue=1.22e-64 | UniProtKB/Swiss-Prot DAT 2026 current_release |