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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_020131
Query referenceOH1004
LocationChr04:52759570-52762645 (+)
DescriptionSimilar to FTSH2: ATP-dependent zinc metalloprotease FTSH 2%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_020131 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 24 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30950 Part of a complex that function as an ATP-dependent zinc metallopeptidase.
Mutations in the Arabidopsis VAR2 locus cause leaf variegation due to the loss of a chloroplast FtsH protease.2000 · DOI: 10.1046/j.1365-313x.2000.00738.x
A critical role for the Var2 FtsH homologue of Arabidopsis thaliana in the photosystem II repair cycle in vivo.2002 · DOI: 10.1074/jbc.m105878200
Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes.2003 · DOI: 10.1105/tpc.017319
At1g06430 Part of a complex that function as an ATP-dependent zinc metallopeptidase. No verified direct reference in this release
At5g15250 Probable ATP-dependent zinc metallopeptidase.
AtFtsH6 is involved in the degradation of the light-harvesting complex II during high-light acclimation and senescence.2005 · DOI: 10.1073/pnas.0503472102

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0669400 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Os06g0229066 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006508proteolysisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010027thylakoid membrane organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010205photoinhibitionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010206photosystem II repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010304PSII associated light-harvesting complex II catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030163protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048564photosystem I assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0072593reactive oxygen species metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=87.445; coverage=93.508; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005777peroxisomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009579thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031977thylakoid lumenCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004176ATP-dependent peptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004222metalloendopeptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008233peptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.27; coverage=91.575; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008237metallopeptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016887ATP hydrolysis activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G06430KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=87.445; coverage=93.508; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G30950KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.701; coverage=94.337; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G15250KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.27; coverage=91.575; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release