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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_019031
Query referenceOH1004
LocationChr04:22368398-22369801 (-)
DescriptionSimilar to PCMP-E21: Pentatricopeptide repeat-containing protein At1g77170%2C mitochondrial (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_019031 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 9 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g77170 Pentatricopeptide repeat-containing protein At1g77170, mitochondrial. No verified direct reference in this release
At4g21065 Pentatricopeptide repeat-containing protein At4g21065. No verified direct reference in this release
At1g59720 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At2g02980 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.892; coverage=103.212; evalue=6.78e-92; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009451RNA modificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.444; coverage=96.36; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016556mRNA modificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.892; coverage=103.212; evalue=6.78e-92; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031425chloroplast RNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.48; coverage=83.94; evalue=3.82e-89; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.444; coverage=96.36; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.444; coverage=96.36; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.444; coverage=96.36; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004519endonuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.892; coverage=103.212; evalue=6.78e-92; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.267; coverage=81.799; evalue=1.42e-98; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G59720KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.892; coverage=103.212; evalue=6.78e-92UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G77170KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.444; coverage=96.36; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G02980KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.48; coverage=83.94; evalue=3.82e-89UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G21065KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.267; coverage=81.799; evalue=1.42e-98UniProtKB/Swiss-Prot DAT 2026 current_release