RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDLXL04_018909
Query referenceOH1004
LocationChr04:19957533-19960654 (-)
DescriptionSimilar to FUM2: Fumarate hydratase 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_018909 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g50950 Cytosolic fumarate hydratase that catalyzes the reversible stereospecific interconversion of fumarate to L-malate.
Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen.2010 · DOI: 10.1111/j.1365-313x.2010.04189.x
FUM2, a Cytosolic Fumarase, Is Essential for Acclimation to Low Temperature in Arabidopsis thaliana.2016 · DOI: 10.1104/pp.16.00852
The complex allosteric and redox regulation of the fumarate hydratase and malate dehydratase reactions of Arabidopsis thaliana Fumarase 1 and 2 gives clues for understanding the massive accumulation of fumarate.2018 · DOI: 10.1111/febs.14483
At2g47510 Catalyzes the reversible stereospecific interconversion of fumarate to L-malate.
The complex allosteric and redox regulation of the fumarate hydratase and malate dehydratase reactions of Arabidopsis thaliana Fumarase 1 and 2 gives clues for understanding the massive accumulation of fumarate.2018 · DOI: 10.1111/febs.14483

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000050urea cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.417; coverage=97.561; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006099tricarboxylic acid cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006106fumarate metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006108malate metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.417; coverage=97.561; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006302double-strand break repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=69.512; coverage=100.0; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006525arginine metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.391; coverage=93.496; evalue=0.0; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006974DNA damage responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.417; coverage=97.561; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009631cold acclimationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010109regulation of photosynthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042128nitrate assimilationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048868pollen tube developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=87.247; coverage=100.407; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051262protein tetramerizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0120162positive regulation of cold-induced thermogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.391; coverage=93.496; evalue=0.0; UniProt GO evidence=ISS:YuBioLabUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2001034positive regulation of double-strand break repair via nonhomologous end joiningBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.417; coverage=97.561; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.417; coverage=97.561; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.417; coverage=97.561; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.391; coverage=93.496; evalue=0.0; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005759mitochondrial matrixCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=69.512; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035861site of double-strand breakCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.391; coverage=93.496; evalue=0.0; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004333fumarate hydratase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042393histone bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.391; coverage=93.496; evalue=0.0; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G47510KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=87.247; coverage=100.407; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G50950KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.15; coverage=94.919; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdre:393938KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.417; coverage=97.561; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrno:24368KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=72.391; coverage=93.496; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release