Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_018785`
Query reference	OH1004
Location	Chr04:18202044-18205869 (+)
Description	Similar to TYW5: tRNA wybutosine-synthesizing protein 5 (Gallus gallus OX%3D9031)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_018785 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 44 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19840`	May function as histone H3 lysine demethylase and be involved in regulation of gene expression.	No verified direct reference in this release
`At3g20810`	Histone demethylase that demethylates 'Lys-36' (H3K36me) of histone H3 with a specific activity for H3K36me3 and H3K36me2.	Jumonji domain protein JMJD5 functions in both the plant and human circadian systems.2010 · DOI: 10.1073/pnas.1014204108 The Jumonji C domain-containing protein JMJ30 regulates period length in the Arabidopsis circadian clock.2011 · DOI: 10.1104/pp.110.167015 JMJD5 Functions in concert with TOC1 in the arabidopsis circadian system.2011 · DOI: 10.4161/psb.6.3.14654 A MYB-domain protein EFM mediates flowering responses to environmental cues in Arabidopsis.2014 · DOI: 10.1016/j.devcel.2014.07.004 Jumonji demethylases moderate precocious flowering at elevated temperature via regulation of FLC in Arabidopsis.2014 · DOI: 10.1038/ncomms6098 JMJ30-mediated demethylation of H3K9me3 drives tissue identity changes to promote callus formation in Arabidopsis.2018 · DOI: 10.1111/tpj.14002 Arabidopsis JMJD5/JMJ30 Acts Independently of LUX ARRHYTHMO Within the Plant Circadian Clock to Enable Temperature Compensation.2019 · DOI: 10.3389/fpls.2019.00057 Abscisic acid-dependent histone demethylation during postgermination growth arrest in Arabidopsis.2019 · DOI: 10.1111/pce.13547 Histone demethylases control root elongation in response to stress-signaling hormone abscisic acid.2019 · DOI: 10.1080/15592324.2019.1604019 Histone Demethylases Coordinate the Antagonistic Interaction Between Abscisic Acid and Brassinosteroid Signaling in Arabidopsis .2020 · DOI: 10.3389/fpls.2020.596835

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000086	G2/M transition of mitotic cell cycle	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.615; coverage=53.942; evalue=1.55e-19; UniProt GO evidence=ISS:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009266	response to temperature stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009741	response to brassinosteroid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009742	brassinosteroid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009787	regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010378	temperature compensation of the circadian clock	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031591	wybutosine biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.259; coverage=56.017; evalue=9.83e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040029	epigenetic regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042752	regulation of circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045814	negative regulation of gene expression, epigenetic	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.615; coverage=53.942; evalue=1.55e-19; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080022	primary root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900140	regulation of seedling development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900457	regulation of brassinosteroid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000028	regulation of photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000791	euchromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.31; coverage=105.187; evalue=5.93e-161; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.615; coverage=53.942; evalue=1.55e-19; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.615; coverage=53.942; evalue=1.55e-19; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000049	tRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.259; coverage=56.017; evalue=9.83e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.615; coverage=53.942; evalue=1.55e-19; UniProt GO evidence=ISS:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005506	iron ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.259; coverage=56.017; evalue=9.83e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.31; coverage=105.187; evalue=5.93e-161; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016787	hydrolase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.615; coverage=53.942; evalue=1.55e-19; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.259; coverage=56.017; evalue=9.83e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.31; coverage=105.187; evalue=5.93e-161; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046975	histone H3K36 methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051864	histone H3K36 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.615; coverage=53.942; evalue=1.55e-19; UniProt GO evidence=ISS:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061628	histone H3K27me3 reader activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071558	histone H3K27me2/H3K27me3 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0102524	tRNA(Phe) (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.259; coverage=56.017; evalue=9.83e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0106157	peptidyl-arginine 3-dioxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.615; coverage=53.942; evalue=1.55e-19; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140680	histone H3K36me/H3K36me2 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140681	histone H3K36me2/H3K36me3 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140684	histone H3K9me2/H3K9me3 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G20810	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.641; coverage=53.112; evalue=2.43e-21	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G19840	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.31; coverage=105.187; evalue=5.93e-161	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dme:Dmel_CG13902	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.615; coverage=53.942; evalue=1.55e-19	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:68736	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.74; coverage=52.697; evalue=1.5e-19	UniProtKB/Swiss-Prot DAT 2026 current_release