Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_018437 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:12938594-12939556 (+) |
| Description | Similar to RPS2D: 40S ribosomal protein S2-4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_018437 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 12 GO annotations and 7 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g57490 |
Small ribosomal subunit protein uS5w. | No verified direct reference in this release |
UniProt: Q93VB8 |
Small ribosomal subunit protein uS5y/uS5u/uS5v. | No verified direct reference in this release |
At1g58380 |
Small ribosomal subunit protein uS5z. | No verified direct reference in this release |
At2g41840 |
Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006412 | translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.688; coverage=80.657; evalue=7.5e-146; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=83.122; coverage=86.496; evalue=7.38e-143; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.388; coverage=86.496; evalue=3.51e-144; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=83.122; coverage=86.496; evalue=7.38e-143; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.688; coverage=80.657; evalue=7.5e-146; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009505 | plant-type cell wall | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.388; coverage=86.496; evalue=3.51e-144; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.688; coverage=80.657; evalue=7.5e-146; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0022626 | cytosolic ribosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=83.122; coverage=86.496; evalue=7.38e-143; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0022627 | cytosolic small ribosomal subunit | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.688; coverage=80.657; evalue=7.5e-146; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.253; coverage=85.036; evalue=6.11e-129; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.688; coverage=80.657; evalue=7.5e-146; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003735 | structural constituent of ribosome | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.688; coverage=80.657; evalue=7.5e-146; UniProt GO evidence=IDA:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G58380 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=84.388; coverage=86.496; evalue=5.14e-144 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G58684 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.388; coverage=86.496; evalue=3.51e-144 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G58983 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.388; coverage=86.496; evalue=3.51e-144 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G59359 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.388; coverage=86.496; evalue=3.51e-144 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G41840 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=83.122; coverage=86.496; evalue=7.38e-143 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G57490 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.688; coverage=80.657; evalue=7.5e-146 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ipu:100304556 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.253; coverage=85.036; evalue=6.11e-129 | UniProtKB/Swiss-Prot DAT 2026 current_release |