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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_018198
Query referenceOH1004
LocationChr04:8544305-8546715 (+)
DescriptionSimilar to UBP22: Ubiquitin C-terminal hydrolase 22 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_018198 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 24 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g10790 Component of a deubiquitination module (DUB module) that specifically deubiquitinates monoubiquitinated histone H2B (H2Bub).
The Adaptor Protein ENY2 Is a Component of the Deubiquitination Module of the Arabidopsis SAGA Transcriptional Co-activator Complex but not of the TREX-2 Complex.2018 · DOI: 10.1016/j.jmb.2018.03.018
DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis.2018 · DOI: 10.7554/elife.37892

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000086G2/M transition of mitotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=IDA:UniProtUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006282regulation of DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=NAS:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006325chromatin organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.452; coverage=96.918; evalue=3.53e-102; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.452; coverage=96.918; evalue=3.53e-102; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006357regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=IDA:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006508proteolysisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.991; coverage=97.432; evalue=2.26e-147; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006511ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.729; coverage=98.116; evalue=9.81e-102; UniProt GO evidence=IC:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016579protein deubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.991; coverage=97.432; evalue=2.26e-147; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032481positive regulation of type I interferon productionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=IDA:UniProtUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043484regulation of RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=NAS:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045931positive regulation of mitotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000124SAGA complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.452; coverage=96.918; evalue=3.53e-102; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.991; coverage=97.432; evalue=2.26e-147; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.991; coverage=97.432; evalue=2.26e-147; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.452; coverage=96.918; evalue=3.53e-102; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070461SAGA-type complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.991; coverage=97.432; evalue=2.26e-147; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003713transcription coactivator activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004843cysteine-type deubiquitinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.991; coverage=97.432; evalue=2.26e-147; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.991; coverage=97.432; evalue=2.26e-147; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010485histone H4 acetyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.729; coverage=98.116; evalue=9.81e-102; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019899enzyme bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140936histone H2B deubiquitinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140950histone H2A deubiquitinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G10790KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.991; coverage=97.432; evalue=2.26e-147UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:509694KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.452; coverage=96.918; evalue=3.53e-102UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:23326KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.446; coverage=97.432; evalue=6.6e-102UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:216825KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.729; coverage=98.116; evalue=9.81e-102UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:444339KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.336; coverage=96.747; evalue=7.3e-101UniProtKB/Swiss-Prot DAT 2026 current_release