Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_017398`
Query reference	OH1004
Location	Chr03:148261650-148264135 (-)
Description	Similar to BHLH95: Transcription factor bHLH95 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_017398 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 29 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g49770`	Transcription factor that controls embryo growth.	No verified direct reference in this release
`At2g22760`	Transcription factor bHLH19.	No verified direct reference in this release
`At2g22770`	Transcription activator that regulates the expression of at least NAI2, PYK10 and PBP1.	A novel ER-derived compartment, the ER body, selectively accumulates a beta-glucosidase with an ER-retention signal in Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01636.x NAI1 gene encodes a basic-helix-loop-helix-type putative transcription factor that regulates the formation of an endoplasmic reticulum-derived structure, the ER body.2004 · DOI: 10.1105/tpc.021154 Activation of an ER-body-localized beta-glucosidase via a cytosolic binding partner in damaged tissues of Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci126 PYK10, a beta-glucosidase located in the endoplasmatic reticulum, is crucial for the beneficial interaction between Arabidopsis thaliana and the endophytic fungus Piriformospora indica.2008 · DOI: 10.1111/j.1365-313x.2008.03424.x Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana.2008 · DOI: 10.1093/pcp/pcn075 NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana.2008 · DOI: 10.1105/tpc.108.059345
`At4g37850`	Transcription factor bHLH25.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007029	endoplasmic reticulum organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.256; coverage=63.518; evalue=1.8e-06; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009649	entrainment of circadian clock	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=NAS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009960	endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010115	regulation of abscisic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010162	seed dormancy process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032922	circadian regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042753	positive regulation of circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:BHF-UCL	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048317	seed morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=ISA:NTNU_SB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034751	aryl hydrocarbon receptor complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990513	CLOCK-BMAL transcription complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.877; coverage=18.567; evalue=1.64e-07; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:BHF-UCL	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:BHF-UCL	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070888	E-box binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G49770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.113; coverage=80.782; evalue=6.85e-51	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G22760	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.877; coverage=18.567; evalue=1.64e-07	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G22770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.256; coverage=63.518; evalue=1.8e-06	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G37850	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=24.43; evalue=6.01e-06	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:56938	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.095; coverage=27.362; evalue=5.91e-07	UniProtKB/Swiss-Prot DAT 2026 current_release