Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_016436`
Query reference	OH1004
Location	Chr03:123320943-123331647 (-)
Description	Similar to CNGC4: Cyclic nucleotide-gated ion channel 4 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_016436 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 22 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54250`	Acts as a cyclic nucleotide-gated ion channel.	HLM1, an essential signaling component in the hypersensitive response, is a member of the cyclic nucleotide-gated channel ion channel family.2003 · DOI: 10.1105/tpc.006999
`At5g15410`	Acts as a cyclic nucleotide-gated ion channel.	The Arabidopsis dnd1 "defense, no death" gene encodes a mutated cyclic nucleotide-gated ion channel.2000 · DOI: 10.1073/pnas.150005697 Developmentally regulated expression of a cyclic nucleotide-gated ion channel from Arabidopsis indicates its involvement in programmed cell death.2001 · DOI: 10.1007/s004250000510
`At5g53130`	Acts as a cyclic nucleotide-gated ion channel.	Expression of a truncated tobacco NtCBP4 channel in transgenic plants and disruption of the homologous Arabidopsis CNGC1 gene confer Pb2+ tolerance.2000 · DOI: 10.1046/j.1365-313x.2000.00901.x Electrophysiological analysis of cloned cyclic nucleotide-gated ion channels.2002 · DOI: 10.1104/pp.010832
`At2g28260`	Putative cyclic nucleotide-gated ion channel.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.387; coverage=81.071; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007263	nitric oxide mediated signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.387; coverage=81.071; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009617	response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.87; coverage=71.606; evalue=6.55e-122; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009626	plant-type hypersensitive response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.066; coverage=75.965; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051592	response to calcium ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.87; coverage=71.606; evalue=6.55e-122; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070509	calcium ion import	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.387; coverage=81.071; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070588	calcium ion transmembrane transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.87; coverage=71.606; evalue=6.55e-122; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071249	cellular response to nitrate	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.87; coverage=71.606; evalue=6.55e-122; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.387; coverage=81.071; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.066; coverage=75.965; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.066; coverage=75.965; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005216	monoatomic ion channel activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.066; coverage=75.965; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005221	intracellularly cyclic nucleotide-activated monoatomic cation channel activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.387; coverage=81.071; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005222	intracellularly cAMP-activated cation channel activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.387; coverage=81.071; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005242	inward rectifier potassium channel activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.387; coverage=81.071; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005249	voltage-gated potassium channel activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.87; coverage=71.606; evalue=6.55e-122; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005262	calcium channel activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.387; coverage=81.071; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005516	calmodulin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.066; coverage=75.965; evalue=0.0; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008324	monoatomic cation transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.066; coverage=75.965; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015085	calcium ion transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.87; coverage=71.606; evalue=6.55e-122; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030552	cAMP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.066; coverage=75.965; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030553	cGMP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.066; coverage=75.965; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G28260	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.87; coverage=71.606; evalue=6.55e-122	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G15410	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.387; coverage=81.071; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G54250	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.066; coverage=75.965; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release