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基因注释

展示当前基因的功能描述、GO/KEGG 注释及分物种同源证据。命中结果按查询版本、序列来源和比对证据分层显示。

示例 TkA01G624900 LXL04_000258 文献示例 LXL04_039733 TkAUNG001940

查询结果

下载当前结果

基因 IDLXL04_013738
当前查询版本OH1004
位置Chr03:35105370-35108944 (+)
描述Similar to DDM1: ATP-dependent DNA helicase DDM1 (Arabidopsis thaliana OX%3D3702)
注释来源组装GCA_047496595.1_OSU_TarKok_2.0

功能注释来源：OH1004 · LXL04_013738 · GCA_047496595.1_OSU_TarKok_2.0。

当前查询返回来自 OH1004 注释条目的 38 条 GO 注释和 5 条 KEGG 基因交叉引用；只下载当前查询结果，不据此推断 KEGG 通路成员。

拟南芥 / 水稻参考基因与文献

文献对应拟南芥或水稻参考基因；橡胶草的功能关联来自当前参考组装的蛋白序列比对。

下载当前基因文献

拟南芥

参考基因 ID可能功能对应论文 / DOI
At5g66750 DNA 或染色质刺激的 ATP 酶在异染色质的形成、组织、稳定性和遗传性中发挥作用，从而调节多种生理特征。
Maintenance of genomic methylation requires a SWI2/SNF2-like protein.1999 · DOI: 10.1038/8803
Maintenance of genomic imprinting at the Arabidopsis medea locus requires zygotic DDM1 activity.1999 · DOI: 10.1101/gad.13.22.2971
Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation.2000 · DOI: 10.1105/tpc.12.3.357
Release of epigenetic gene silencing by trans-acting mutations in Arabidopsis.1998 · DOI: 10.1073/pnas.95.2.632
Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).2001 · DOI: 10.1101/gad.193701
Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis.2001 · DOI: 10.1038/35075612
Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses.2002 · DOI: 10.1101/gr.196001
Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.2002 · DOI: 10.1126/science.1074950
Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation.2002 · DOI: 10.1016/s0960-9822(02)00976-4
Two regulatory levels of transcriptional gene silencing in Arabidopsis.2002 · DOI: 10.1073/pnas.202380499
Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factors.2003 · DOI: 10.1074/jbc.m209260200
DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.2002 · DOI: 10.1093/emboj/cdf657
Expression of Arabidopsis LINEs from two promoters.2002 · DOI: 10.1046/j.1365-313x.2002.01466.x
Two means of transcriptional reactivation within heterochromatin.2003 · DOI: 10.1046/j.1365-313x.2003.01667.x
Arabidopsis MET1 cytosine methyltransferase mutants.2003 · DOI: 10.1093/genetics/163.3.1109
Genomic localization of endogenous mobile CACTA family transposons in natural variants of Arabidopsis thaliana.2004 · DOI: 10.1007/s00438-003-0943-y
Changes in 5S rDNA chromatin organization and transcription during heterochromatin establishment in Arabidopsis.2003 · DOI: 10.1105/tpc.017467
Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification.2003 · DOI: 10.1371/journal.pbio.0000067
Role of transposable elements in heterochromatin and epigenetic control.2004 · DOI: 10.1038/nature02651
Epigenetic control of CACTA transposon mobility in Arabidopsis thaliana.2004 · DOI: 10.1534/genetics.104.029637
Transcript profiling in Arabidopsis reveals complex responses to global inhibition of DNA methylation and histone deacetylation.2005 · DOI: 10.1074/jbc.m409053200
DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization.2005 · DOI: 10.1105/tpc.105.031567
DNA methylation increases throughout Arabidopsis development.2005 · DOI: 10.1007/s00425-005-1524-6
Epigenetic regulation of transcription in intermediate heterochromatin.2006 · DOI: 10.1038/sj.embor.7400835
Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats.2007 · DOI: 10.1111/j.1365-313x.2006.02936.x
Differential epigenetic regulation within an Arabidopsis retroposon family.2007 · DOI: 10.1534/genetics.107.071092
Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatin-remodeling factor DDM1.2007 · DOI: 10.1038/sj.emboj.7601788
Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis.2009 · DOI: 10.1371/journal.pone.0005932
Characterization of an Arabidopsis thaliana DNA hypomethylation mutant.1995 · DOI: 10.1093/nar/23.1.130
Arabidopsis thaliana DNA methylation mutants.1993 · DOI: 10.1126/science.8316832
Developmental abnormalities and epimutations associated with DNA hypomethylation mutations.1996 · DOI: 10.1073/pnas.93.22.12406
Genetic characterization of late-flowering traits induced by DNA hypomethylation mutation in Arabidopsis thaliana.1997 · DOI: 10.1046/j.1365-313x.1997.12061447.x
Gene silencing and homology-dependent gene silencing in Arabidopsis: genetic modifiers and DNA methylation.1998 · DOI: 10.1093/genetics/149.2.651
The DNA methylation locus DDM1 is required for maintenance of gene silencing in Arabidopsis.1998 · DOI: 10.1101/gad.12.11.1714
Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana.1999 · DOI: 10.1093/genetics/151.2.831

水稻

当前来源表未检出该物种的同源命中。

GO / KEGG

以下 GO/KEGG 注释源自上述 OH1004 注释条目，保留原始同源转移证据及覆盖度；其来源物种范围与拟南芥/水稻直接比对表不同。

类型ID名称命名空间证据来源
GOGO:0000724double-strand break repair via homologous recombination生物过程Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006302double-strand break repair生物过程Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006338chromatin remodeling生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006346DNA methylation-dependent constitutive heterochromatin formation生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcription生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcription生物过程Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.314; 覆盖度=70.066; E 值=3.55e-151; UniProt GO evidence=IDA:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009294DNA-mediated transformation生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031507heterochromatin formation生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031508pericentric heterochromatin formation生物过程Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032197retrotransposition生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0040029epigenetic regulation of gene expression生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IMP:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044027negative regulation of gene expression via chromosomal CpG island methylation生物过程Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcription生物过程Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.314; 覆盖度=70.066; E 值=3.55e-151; UniProt GO evidence=IMP:HGNC-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase II生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051301cell division生物过程Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141119chromosomal DNA methylation maintenance following DNA replication生物过程Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=39.95; 覆盖度=106.093; E 值=5.4e-166; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990830cellular response to leukemia inhibitory factor生物过程Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=39.95; 覆盖度=106.093; E 值=5.4e-166; UniProt GO evidence=IEP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000775chromosome, centromeric region细胞组分Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatin细胞组分Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000786nucleosome细胞组分Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleus细胞组分Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasm细胞组分Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.314; 覆盖度=70.066; E 值=3.55e-151; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005721pericentric heterochromatin细胞组分Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016589NURF complex细胞组分Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.314; 覆盖度=70.066; E 值=3.55e-151; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035861site of double-strand break细胞组分Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090537CERF complex细胞组分Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.314; 覆盖度=70.066; E 值=3.55e-151; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA binding分子功能Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin binding分子功能Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004386helicase activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP binding分子功能Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016787hydrolase activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=44.908; 覆盖度=79.338; E 值=1.6e-161; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016887ATP hydrolysis activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031491nucleosome binding分子功能Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.314; 覆盖度=70.066; E 值=3.55e-151; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036310ATP-dependent DNA/DNA annealing activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.314; 覆盖度=70.066; E 值=3.55e-151; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061629RNA polymerase II-specific DNA-binding transcription factor binding分子功能Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.314; 覆盖度=70.066; E 值=3.55e-151; UniProt GO evidence=IPI:ParkinsonsUK-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140463chromatin-protein adaptor activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140658ATP-dependent chromatin remodeler activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140750nucleosome array spacer activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G66750KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=1; 一致性=70.696; 覆盖度=100.795; E 值=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:3070KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=2; 一致性=39.581; 覆盖度=107.417; E 值=2.56e-167UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:6594KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.314; 覆盖度=70.066; E 值=3.55e-151UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:15201KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=3; 一致性=39.95; 覆盖度=106.093; E 值=5.4e-166UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:446222KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=4; 一致性=44.908; 覆盖度=79.338; E 值=1.6e-161UniProtKB/Swiss-Prot DAT 2026 current_release