Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_013357`
Query reference	OH1004
Location	Chr03:28412870-28414206 (-)
Description	Similar to PRE6: Transcription factor PRE6 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013357 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g26945`	Atypical and probable non DNA-binding bHLH transcription factor that regulates light-mediated responses in day light conditions by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance.	No verified direct reference in this release
`At3g28857`	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development.	No verified direct reference in this release
`At5g15160`	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development.	The Arabidopsis floral homeotic proteins APETALA3 and PISTILLATA negatively regulate the BANQUO genes implicated in light signaling.2010 · DOI: 10.1105/tpc.109.065946
`At5g39860`	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development.	Overexpression of PRE1 and its homologous genes activates Gibberellin-dependent responses in Arabidopsis thaliana.2006 · DOI: 10.1093/pcp/pcj026 Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis.2009 · DOI: 10.1105/tpc.109.070441 The Arabidopsis floral homeotic proteins APETALA3 and PISTILLATA negatively regulate the BANQUO genes implicated in light signaling.2010 · DOI: 10.1105/tpc.109.065946 A triantagonistic basic helix-loop-helix system regulates cell elongation in Arabidopsis.2012 · DOI: 10.1105/tpc.112.105023 A triple helix-loop-helix/basic helix-loop-helix cascade controls cell elongation downstream of multiple hormonal and environmental signaling pathways in Arabidopsis.2012 · DOI: 10.1105/tpc.112.105163

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0171300`	Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size.	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice.2012 · DOI: 10.1371/journal.pone.0031325

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=37.879; evalue=2.32e-33; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=37.879; evalue=2.32e-33; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009416	response to light stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=37.879; evalue=2.32e-33; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009640	photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=75.0; coverage=38.384; evalue=1.85e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009740	gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.791; coverage=43.434; evalue=1.01e-32; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009741	response to brassinosteroid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=63.291; coverage=39.899; evalue=2.27e-30; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009742	brassinosteroid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=63.291; coverage=39.899; evalue=2.27e-30; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009826	unidimensional cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=63.291; coverage=39.899; evalue=2.27e-30; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040008	regulation of growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=37.879; evalue=2.32e-33; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=75.0; coverage=38.384; evalue=1.85e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080113	regulation of seed growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.158; coverage=38.384; evalue=3.87e-26; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000325	plant-type vacuole	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=75.0; coverage=38.384; evalue=1.85e-32; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=37.879; evalue=2.32e-33; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=37.879; evalue=2.32e-33; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=75.0; coverage=38.384; evalue=1.85e-32; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=37.879; evalue=2.32e-33; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G26945	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=37.879; evalue=2.32e-33	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G28857	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.791; coverage=43.434; evalue=1.01e-32	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G15160	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=75.0; coverage=38.384; evalue=1.85e-32	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G39860	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=63.291; coverage=39.899; evalue=2.27e-30	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0171300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.158; coverage=38.384; evalue=3.87e-26	UniProtKB/Swiss-Prot DAT 2026 current_release