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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_013278
Query referenceOH1004
LocationChr03:26934158-26935677 (-)
DescriptionSimilar to PDF1B: Peptide deformylase 1B%2C chloroplastic (Solanum lycopersicum OX%3D4081)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013278 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 7 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g14660 Removes the formyl group from the N-terminal Met of newly synthesized proteins.
Eukaryotic peptide deformylases. Nuclear-encoded and chloroplast-targeted enzymes in Arabidopsis.2001 · DOI: 10.1104/pp.127.1.97
Insights into the substrate specificity of plant peptide deformylase, an essential enzyme with potential for the development of novel biotechnology applications in agriculture.2008 · DOI: 10.1042/bj20071641

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0637600 Removes the formyl group from the N-terminal Met of newly synthesized proteins. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006412translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.288; coverage=91.829; evalue=3.98e-100; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.65; coverage=106.615; evalue=2.04e-98; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.288; coverage=91.829; evalue=3.98e-100; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.65; coverage=106.615; evalue=2.04e-98; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.65; coverage=106.615; evalue=2.04e-98; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042586peptide deformylase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.288; coverage=91.829; evalue=3.98e-100; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.288; coverage=91.829; evalue=3.98e-100; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G14660KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.65; coverage=106.615; evalue=2.04e-98UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0637600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.135; coverage=80.934; evalue=1.73e-84UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrba:RB12856KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.555; coverage=74.319; evalue=1.16e-30UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:543648KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.288; coverage=91.829; evalue=3.98e-100UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsyp:SYNPCC7002_A2348KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.868; coverage=70.817; evalue=3.08e-29UniProtKB/Swiss-Prot DAT 2026 current_release