Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_012179 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:7890208-7892112 (+) |
| Description | Similar to At2g40430: Ribosome biogenesis protein NOP53 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_012179 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 34 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g40430 |
May play a role in ribosome biogenesis. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000027 | ribosomal large subunit assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000460 | maturation of 5.8S rRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001932 | regulation of protein phosphorylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007095 | mitotic G2 DNA damage checkpoint signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010971 | positive regulation of G2/M transition of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031333 | negative regulation of protein-containing complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032435 | negative regulation of proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0039535 | regulation of RIG-I signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042254 | ribosome biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050821 | protein stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051726 | regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051781 | positive regulation of cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051898 | negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071456 | cellular response to hypoxia | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901837 | negative regulation of transcription of nucleolar large rRNA by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901857 | positive regulation of cellular respiration | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.316; coverage=111.765; evalue=1.44e-15; UniProt GO evidence=IMP:WormBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902570 | protein localization to nucleolus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903006 | positive regulation of protein K63-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903715 | regulation of aerobic respiration | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990173 | protein localization to nucleoplasm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001650 | fibrillar center | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033553 | rDNA heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002039 | p53 binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008097 | 5S rRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G40430 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.462; coverage=66.667; evalue=1.13e-73 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cel:CELE_Y39B6A.33 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.316; coverage=111.765; evalue=1.44e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:68077 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=110.924; evalue=3.49e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2541680 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.273; coverage=107.843; evalue=1.72e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release |