Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_011885`
Query reference	OH1004
Location	Chr03:2187078-2187849 (+)
Description	Similar to LAF1: Transcription factor LAF1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011885 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g25560`	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses.	LAF1, a MYB transcription activator for phytochrome A signaling.2001 · DOI: 10.1101/gad.915001 FAR-RED ELONGATED HYPOCOTYL1 and FHY1-LIKE associate with the Arabidopsis transcription factors LAF1 and HFR1 to transmit phytochrome A signals for inhibition of hypocotyl elongation.2009 · DOI: 10.1105/tpc.109.067215
`At5g26660`	Probable transcription factor.	No verified direct reference in this release
`At1g09540`	Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation.	AtMYB61, an R2R3-MYB transcription factor controlling stomatal aperture in Arabidopsis thaliana.2005 · DOI: 10.1016/j.cub.2005.06.041 MUM ENHANCERS are important for seed coat mucilage production and mucilage secretory cell differentiation in Arabidopsis thaliana.2009 · DOI: 10.1093/jxb/erp102 AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network.2012 · DOI: 10.1111/j.1469-8137.2012.04201.x Interactions between the R2R3-MYB transcription factor, AtMYB61, and target DNA binding sites.2013 · DOI: 10.1371/journal.pone.0065132 AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.2017 · DOI: 10.1111/tpj.13509
`At3g01140`	Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation.	Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.2008 · DOI: 10.1104/pp.108.126979 MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.2013 · DOI: 10.1105/tpc.113.110783 The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs.2013 · DOI: 10.4161/psb.26826
`At5g65230`	Probable transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000902	cell morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.385; coverage=46.581; evalue=1.24e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009585	red, far-red light phototransduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009639	response to red or far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010018	far-red light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010087	phloem or xylem histogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.192; coverage=44.444; evalue=3.22e-49; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010089	xylem development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.192; coverage=44.444; evalue=3.22e-49; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010091	trichome branching	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.385; coverage=46.581; evalue=1.24e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.192; coverage=44.444; evalue=3.22e-49; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010214	seed coat development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.192; coverage=44.444; evalue=3.22e-49; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.993; coverage=59.402; evalue=1.29e-49; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.192; coverage=44.444; evalue=3.22e-49; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901957	regulation of cutin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.385; coverage=46.581; evalue=1.24e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016607	nuclear speck	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.385; coverage=46.581; evalue=1.24e-45; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G09540	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.192; coverage=44.444; evalue=3.22e-49	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G01140	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.385; coverage=46.581; evalue=1.24e-45	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G25560	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.108; coverage=79.06; evalue=7.31e-55	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G26660	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.993; coverage=59.402; evalue=1.29e-49	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G65230	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.331; coverage=51.709; evalue=9.44e-46	UniProtKB/Swiss-Prot DAT 2026 current_release