基因注释
展示当前基因的功能描述、GO/KEGG 注释及分物种同源证据。命中结果按查询版本、序列来源和比对证据分层显示。
查询结果
| 基因 ID | LXL04_009969 |
|---|---|
| 当前查询版本 | OH1004 |
| 位置 | Chr02:136956150-136959007 (+) |
| 描述 | Similar to P67: Pentatricopeptide repeat-containing protein At4g16390%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| 注释来源组装 | GCA_047496595.1_OSU_TarKok_2.0 |
功能注释来源：OH1004 · LXL04_009969 · GCA_047496595.1_OSU_TarKok_2.0。
当前查询返回来自 OH1004 注释条目的 16 条 GO 注释和 6 条 KEGG 基因交叉引用；只下载当前查询结果，不据此推断 KEGG 通路成员。
拟南芥 / 水稻参考基因与文献
文献对应拟南芥或水稻参考基因；橡胶草的功能关联来自当前参考组装的蛋白序列比对。
拟南芥
| 参考基因 ID | 可能功能 | 对应论文 / DOI |
|---|---|---|
At4g16390 |
参与叶绿体 RNA 加工。 |
An Arabidopsis pentatricopeptide repeat protein, SUPPRESSOR OF VARIEGATION7, is required for FtsH-mediated chloroplast biogenesis.2010 · DOI: 10.1104/pp.110.164111
|
At5g46580 |
含五肽重复的蛋白 At5g46580，叶绿体型。 | 暂无已核实直接文献 |
At2g31400 |
通过逆行的质体到细胞核信号参与核基因表达。 |
Signals from chloroplasts converge to regulate nuclear gene expression.2007 · PMID: 17395793 Plastid signals that affect photomorphogenesis in Arabidopsis thaliana are dependent on GENOMES UNCOUPLED 1 and cryptochrome 1.2009 · DOI: 10.1111/j.1469-8137.2008.02729.x
|
水稻
| 参考基因 ID | 可能功能 | 对应论文 / DOI |
|---|---|---|
Os03g0215900 |
参与叶绿体ATP合酶亚基的翻译和积累。 | 暂无已核实直接文献 |
GO / KEGG
以下 GO/KEGG 注释源自上述 OH1004 注释条目，保留原始同源转移证据及覆盖度；其来源物种范围与拟南芥/水稻直接比对表不同。
| 类型 | ID | 名称 | 命名空间 | 证据 | 来源 |
|---|---|---|---|---|---|
| GO | GO:0006397 | mRNA processing | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=48.378; 覆盖度=82.182; E 值=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009658 | chloroplast organization | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=62.5; 覆盖度=78.545; E 值=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010019 | chloroplast-nucleus signaling pathway | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=26.241; 覆盖度=68.364; E 值=3.63e-45; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031425 | chloroplast RNA processing | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=62.5; 覆盖度=78.545; E 值=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031930 | mitochondria-nucleus signaling pathway | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=26.241; 覆盖度=68.364; E 值=3.63e-45; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042254 | ribosome biogenesis | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=38.131; 覆盖度=81.697; E 值=1.62e-159; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045727 | positive regulation of translation | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=62.5; 覆盖度=78.545; E 值=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901259 | chloroplast rRNA processing | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=38.131; 覆盖度=81.697; E 值=1.62e-159; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=62.5; 覆盖度=78.545; E 值=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=62.5; 覆盖度=78.545; E 值=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000166 | nucleotide binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=62.5; 覆盖度=78.545; E 值=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=26.241; 覆盖度=68.364; E 值=3.63e-45; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=62.5; 覆盖度=78.545; E 值=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004530 | deoxyribonuclease I activity | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=38.131; 覆盖度=81.697; E 值=1.62e-159; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033902 | rRNA endonuclease activity | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=38.131; 覆盖度=81.697; E 值=1.62e-159; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042134 | rRNA primary transcript binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=62.5; 覆盖度=78.545; E 值=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G31400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=26.241; 覆盖度=68.364; E 值=3.63e-45 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G16390 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=62.5; 覆盖度=78.545; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G46580 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=38.131; 覆盖度=81.697; E 值=1.62e-159 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0215900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=49.698; 覆盖度=80.242; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4332063 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=49.698; 覆盖度=80.242; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | zma:100191483 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=48.378; 覆盖度=82.182; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |