Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_009599`
Query reference	OH1004
Location	Chr02:129449341-129450423 (+)
Description	Similar to ARR5: Two-component response regulator ARR5 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009599 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48100`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	No verified direct reference in this release
`At5g62920`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	No verified direct reference in this release
`At1g19050`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	No verified direct reference in this release
`At1g74890`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	Characterization of the ARR15 and ARR16 response regulators with special reference to the cytokinin signaling pathway mediated by the AHK4 histidine kinase in roots of Arabidopsis thaliana.2002 · DOI: 10.1093/pcp/pcf121 The type-A response regulator, ARR15, acts as a negative regulator in the cytokinin-mediated signal transduction in Arabidopsis thaliana.2003 · DOI: 10.1093/pcp/pcg108
`At1g59940`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling.2004 · DOI: 10.1105/tpc.018978

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000160	phosphorelay signal transduction system	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.62; coverage=89.266; evalue=1.3e-71; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009735	response to cytokinin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009736	cytokinin-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010114	response to red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010161	red light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.318; coverage=72.881; evalue=7.94e-64; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019827	stem cell population maintenance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.347; coverage=83.051; evalue=9.22e-66; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=68.75; coverage=81.356; evalue=3.95e-64; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000156	phosphorelay response regulator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G19050	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.347; coverage=83.051; evalue=9.22e-66	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G59940	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.318; coverage=72.881; evalue=7.94e-64	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G74890	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=68.75; coverage=81.356; evalue=3.95e-64	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G48100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.333; coverage=84.746; evalue=1.12e-71	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G62920	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.62; coverage=89.266; evalue=1.3e-71	UniProtKB/Swiss-Prot DAT 2026 current_release