Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_009538`
Query reference	OH1004
Location	Chr02:128442249-128443670 (+)
Description	Similar to BOI: E3 ubiquitin-protein ligase BOI (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009538 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g19700`	E3 ubiquitin-protein ligase involved in the regulation of pathogen and abiotic stress responses by facilitating degradation of MYB108/BOI.	No verified direct reference in this release
`At1g79110`	Probable E3 ubiquitin-protein ligase.	DELLA proteins and their interacting RING Finger proteins repress gibberellin responses by binding to the promoters of a subset of gibberellin-responsive genes in Arabidopsis.2013 · DOI: 10.1105/tpc.112.108951
`At3g12920`	Probable E3 ubiquitin-protein ligase.	DELLA proteins and their interacting RING Finger proteins repress gibberellin responses by binding to the promoters of a subset of gibberellin-responsive genes in Arabidopsis.2013 · DOI: 10.1105/tpc.112.108951
`At5g45100`	E3 ubiquitin-protein ligase involved in regulation of abiotic stress responses.	DELLA proteins and their interacting RING Finger proteins repress gibberellin responses by binding to the promoters of a subset of gibberellin-responsive genes in Arabidopsis.2013 · DOI: 10.1105/tpc.112.108951

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.928; coverage=29.129; evalue=4.2e-07; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.776; coverage=64.264; evalue=1.05e-20; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007032	endosome organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.928; coverage=29.129; evalue=4.2e-07; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009739	response to gibberellin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.928; coverage=29.129; evalue=4.2e-07; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032479	regulation of type I interferon production	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.928; coverage=29.129; evalue=4.2e-07; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043067	regulation of programmed cell death	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043069	negative regulation of programmed cell death	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050687	negative regulation of defense response to virus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.928; coverage=29.129; evalue=4.2e-07; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070979	protein K11-linked ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.928; coverage=29.129; evalue=4.2e-07; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1905719	protein localization to perinuclear region of cytoplasm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.928; coverage=29.129; evalue=4.2e-07; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.928; coverage=29.129; evalue=4.2e-07; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004869	cysteine-type endopeptidase inhibitor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G79110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.776; coverage=64.264; evalue=1.05e-20	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G12920	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.353; coverage=61.261; evalue=2.18e-20	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G19700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.344; coverage=77.778; evalue=5.76e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G45100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=61.562; evalue=9.88e-18	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:213211	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.928; coverage=29.129; evalue=4.2e-07	UniProtKB/Swiss-Prot DAT 2026 current_release