Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_009109 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:118032782-118033240 (-) |
| Description | Similar to ATL79: RING-H2 finger protein ATL79 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_009109 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 10 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g47610 |
RING-H2 finger protein ATL79. | No verified direct reference in this release |
At2g37580 |
RING-H2 finger protein ATL33. | No verified direct reference in this release |
At3g03550 |
RING-H2 finger protein ATL51. | No verified direct reference in this release |
At5g05280 |
RING-H2 finger protein ATL73. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0590900 |
Possesses E3 ubiquitin-protein ligase in vitro. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009555 | pollen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.047; coverage=56.579; evalue=2.33e-12; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009901 | anther dehiscence | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.047; coverage=56.579; evalue=2.33e-12; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.432; coverage=73.026; evalue=1.67e-13; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048443 | stamen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.047; coverage=56.579; evalue=2.33e-12; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080141 | regulation of jasmonic acid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.047; coverage=56.579; evalue=2.33e-12; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.432; coverage=73.026; evalue=1.67e-13; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.432; coverage=73.026; evalue=1.67e-13; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.047; coverage=56.579; evalue=2.33e-12; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.432; coverage=73.026; evalue=1.67e-13; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.432; coverage=73.026; evalue=1.67e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G37580 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.667; coverage=55.263; evalue=2.36e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G03550 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.091; coverage=28.947; evalue=5.73e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G05280 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.047; coverage=56.579; evalue=2.33e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G47610 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.432; coverage=73.026; evalue=1.67e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0590900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.061; coverage=32.237; evalue=6.28e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release |