Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_007614 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:54203463-54206193 (-) |
| Description | Similar to SCL28: Serine/arginine-rich SC35-like splicing factor SCL28 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_007614 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g18810 |
Involved in intron recognition and spliceosome assembly (Probable). | No verified direct reference in this release |
At3g13570 |
Involved in intron recognition and spliceosome assembly. | |
At1g55310 |
Involved in intron recognition and spliceosome assembly. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000244 | spliceosomal tri-snRNP complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.652; coverage=36.8; evalue=2.19e-24; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000375 | RNA splicing, via transesterification reactions | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.739; coverage=36.8; evalue=3.01e-23; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.492; coverage=47.2; evalue=2.51e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000395 | mRNA 5'-splice site recognition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.652; coverage=36.8; evalue=2.19e-24; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.492; coverage=47.2; evalue=2.51e-49; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.739; coverage=36.8; evalue=3.01e-23; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006376 | mRNA splice site recognition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.739; coverage=36.8; evalue=3.01e-23; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.211; coverage=38.0; evalue=1.38e-37; UniProt GO evidence=NAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016482 | cytosolic transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.739; coverage=36.8; evalue=3.01e-23; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048024 | regulation of mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.739; coverage=36.8; evalue=3.01e-23; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048025 | negative regulation of mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.652; coverage=36.8; evalue=2.19e-24; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.492; coverage=47.2; evalue=2.51e-49; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.652; coverage=36.8; evalue=2.19e-24; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005681 | spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.492; coverage=47.2; evalue=2.51e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.5; coverage=35.2; evalue=1.59e-33; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.5; coverage=35.2; evalue=1.59e-33; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.211; coverage=38.0; evalue=1.38e-37; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.5; coverage=35.2; evalue=1.59e-33; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.492; coverage=47.2; evalue=2.51e-49; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035061 | interchromatin granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.5; coverage=35.2; evalue=1.59e-33; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.5; coverage=35.2; evalue=1.59e-33; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.492; coverage=47.2; evalue=2.51e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.5; coverage=35.2; evalue=1.59e-33; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050733 | RS domain binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.652; coverage=36.8; evalue=2.19e-24; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051082 | unfolded protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.652; coverage=36.8; evalue=2.19e-24; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G55310 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.5; coverage=35.2; evalue=1.59e-33 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G13570 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.211; coverage=38.0; evalue=1.38e-37 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G18810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.492; coverage=47.2; evalue=2.51e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:135295 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.652; coverage=36.8; evalue=2.19e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:14105 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.739; coverage=36.8; evalue=3.01e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release |