Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_007137 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:37097375-37099067 (+) |
| Description | Similar to PBRP1: Plant-specific TFIIB-related protein 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_007137 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 39 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g36650 |
Plant-specific TFIIB-related protein that may be involved in an intracellular signaling pathway between plastids and the nucleus. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001174 | transcriptional start site selection at RNA polymerase II promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006352 | DNA-templated transcription initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006366 | transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006367 | transcription initiation at RNA polymerase II promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006473 | protein acetylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.5; coverage=45.351; evalue=9.09e-29; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010467 | gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019083 | viral transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.5; coverage=45.351; evalue=9.09e-29; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051123 | RNA polymerase II preinitiation complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051177 | meiotic sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051225 | spindle assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051276 | chromosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070897 | transcription preinitiation complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990114 | RNA polymerase II core complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000776 | kinetochore | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000793 | condensed chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005669 | transcription factor TFIID complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005694 | chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.5; coverage=45.351; evalue=9.09e-29; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009527 | plastid outer membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009707 | chloroplast outer membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032153 | cell division site | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032993 | protein-DNA complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090575 | RNA polymerase II transcription regulator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097550 | transcription preinitiation complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000182 | rDNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000993 | RNA polymerase II complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001139 | RNA polymerase II complex recruiting activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30; UniProt GO evidence=ISS:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016251 | RNA polymerase II general transcription initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016407 | acetyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.5; coverage=45.351; evalue=9.09e-29; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017025 | TBP-class protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046966 | nuclear thyroid hormone receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061733 | protein-lysine-acetyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.5; coverage=45.351; evalue=9.09e-29; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140297 | DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990841 | promoter-specific chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.5; coverage=45.351; evalue=9.09e-29; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G36650 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.769; coverage=84.58; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0290929 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=46.259; evalue=3.48e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:229906 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.5; coverage=45.351; evalue=1.08e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:81673 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.5; coverage=45.351; evalue=1.08e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:394390 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.5; coverage=45.351; evalue=9.09e-29 | UniProtKB/Swiss-Prot DAT 2026 current_release |