Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_006300`
Query reference	OH1004
Location	Chr02:6381307-6382954 (+)
Description	Similar to CSA: Transcription factor CSA (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_006300 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69560`	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning.	LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis.2009 · DOI: 10.1242/dev.031971
`At1g26780`	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning.	LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis.2009 · DOI: 10.1242/dev.031971 Characterization of constricted fruit (ctf) mutant uncovers a role for AtMYB117/LOF1 in ovule and fruit development in Arabidopsis thaliana.2011 · DOI: 10.1371/journal.pone.0018760
`At5g17800`	Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root.	MYB56 encoding a R2R3 MYB transcription factor regulates seed size in Arabidopsis thaliana.2013 · DOI: 10.1111/jipb.12094 Regulation of plant stem cell quiescence by a brassinosteroid signaling module.2014 · DOI: 10.1016/j.devcel.2014.05.020 Identification of Arabidopsis MYB56 as a novel substrate for CRL3BPM E3 ligases.2014 · DOI: 10.1093/mp/ssu120
`At1g17950`	Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought.	A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325 Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.2013 · DOI: 10.3389/fpls.2013.00189

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0274800`	Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0001935	endothelial cell proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.821; coverage=43.58; evalue=5.29e-49; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.821; coverage=43.58; evalue=5.29e-49; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.356; coverage=39.3; evalue=3.81e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.356; coverage=39.3; evalue=3.81e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009742	brassinosteroid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009834	plant-type secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.356; coverage=39.3; evalue=3.81e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010199	organ boundary specification between lateral organs and the meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=89.883; evalue=2.59e-48; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048579	negative regulation of long-day photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051782	negative regulation of cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071367	cellular response to brassinosteroid stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071555	cell wall organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.356; coverage=39.3; evalue=3.81e-45; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080060	integument development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080113	regulation of seed growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901347	negative regulation of secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.356; coverage=39.3; evalue=3.81e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901348	positive regulation of secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.356; coverage=39.3; evalue=3.81e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902074	response to salt	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.356; coverage=39.3; evalue=3.81e-45; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1904961	quiescent center organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000652	regulation of secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.356; coverage=39.3; evalue=3.81e-45; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.821; coverage=43.58; evalue=5.29e-49; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.821; coverage=43.58; evalue=5.29e-49; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.821; coverage=43.58; evalue=5.29e-49; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=89.883; evalue=2.59e-48; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G17950	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.356; coverage=39.3; evalue=3.81e-45	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G26780	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.857; coverage=40.856; evalue=4.18e-46	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G69560	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=89.883; evalue=2.59e-48	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G17800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.2; coverage=97.276; evalue=4.62e-46	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0274800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.821; coverage=43.58; evalue=5.29e-49	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4325181	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.821; coverage=43.58; evalue=5.29e-49	UniProtKB/Swiss-Prot DAT 2026 current_release