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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_005725
Query referenceOH1004
LocationChr01:172215822-172224478 (-)
DescriptionSimilar to YSL3: Metal-nicotianamine transporter YSL3 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005725 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g53550 May be involved in the lateral transport of nicotianamine- chelated metals in the vasculature.
Mutations in Arabidopsis yellow stripe-like1 and yellow stripe-like3 reveal their roles in metal ion homeostasis and loading of metal ions in seeds.2006 · DOI: 10.1104/pp.106.082586
At5g24380 May be involved in the lateral transport of nicotianamine- chelated metals in the vasculature.
Arabidopsis Yellow Stripe-Like2 (YSL2): a metal-regulated gene encoding a plasma membrane transporter of nicotianamine-metal complexes.2004 · DOI: 10.1111/j.1365-313x.2004.02128.x
At4g24120 Involved in iron loading of the seeds.
A loss-of-function mutation in AtYSL1 reveals its role in iron and nicotianamine seed loading.2005 · DOI: 10.1111/j.1365-313x.2005.02569.x
Mutations in Arabidopsis yellow stripe-like1 and yellow stripe-like3 reveal their roles in metal ion homeostasis and loading of metal ions in seeds.2006 · DOI: 10.1104/pp.106.082586

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0542200 May be involved in the transport of nicotianamine-chelated metals. No verified direct reference in this release
Os04g0542800 May be involved in the transport of nicotianamine-chelated metals. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0003006developmental process involved in reproductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006811monoatomic ion transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.464; coverage=61.138; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006826iron ion transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009624response to nematodeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0; UniProt GO evidence=HEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010039response to iron ionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010043response to zinc ionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.464; coverage=61.138; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048316seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035673oligopeptide transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G24120KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.349; coverage=61.825; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G24380KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.464; coverage=61.138; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G53550KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.71; coverage=60.844; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os04g0542200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.089; coverage=60.746; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os04g0542800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.427; coverage=58.783; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release