Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_005506`
Query reference	OH1004
Location	Chr01:165769133-165770565 (+)
Description	Similar to ODO1: Protein ODORANT1 (Petunia hybrida OX%3D4102)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005506 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g66230`	Transcription factor that acts as a positive regulator of abscisic acid (ABA) signaling in response to salt stress.	An Arabidopsis R2R3-MYB transcription factor, AtMYB20, negatively regulates type 2C serine/threonine protein phosphatases to enhance salt tolerance.2013 · DOI: 10.1016/j.febslet.2013.04.028
`At4g28110`	Transcription factor involved in salt stress response.	AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis.2009 · DOI: 10.1104/pp.108.134874 Phosphorylation by AtMPK6 is required for the biological function of AtMYB41 in Arabidopsis.2012 · DOI: 10.1016/j.bbrc.2012.04.137 AtMYB41 activates ectopic suberin synthesis and assembly in multiple plant species and cell types.2014 · DOI: 10.1111/tpj.12624
`At3g61250`	Transcription factor that may play a role in flower development by repressing ANT.	Characterization of Arabidopsis MYB transcription factor gene AtMYB17 and its possible regulation by LEAFY and AGL15.2009 · DOI: 10.1016/s1673-8527(08)60096-x LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1.2011 · DOI: 10.1242/dev.063073

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.679; coverage=105.018; evalue=2.13e-107; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.679; coverage=105.018; evalue=2.13e-107; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.679; coverage=105.018; evalue=2.13e-107; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009094	L-phenylalanine biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009423	chorismate biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.679; coverage=105.018; evalue=2.13e-107; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.094; coverage=45.878; evalue=8.88e-66; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009825	multidimensional cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.094; coverage=45.878; evalue=8.88e-66; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=67.606; coverage=50.896; evalue=1.68e-64; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009909	regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=67.606; coverage=50.896; evalue=1.68e-64; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010143	cutin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.094; coverage=45.878; evalue=8.88e-66; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.679; coverage=105.018; evalue=2.13e-107; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010597	green leaf volatile biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.679; coverage=105.018; evalue=2.13e-107; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080090	regulation of primary metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.094; coverage=45.878; evalue=8.88e-66; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080091	regulation of raffinose metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.094; coverage=45.878; evalue=8.88e-66; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901002	positive regulation of response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901141	regulation of lignin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902074	response to salt	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.094; coverage=45.878; evalue=8.88e-66; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000652	regulation of secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000762	regulation of phenylpropanoid metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.679; coverage=105.018; evalue=2.13e-107; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.679; coverage=105.018; evalue=2.13e-107; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.538; coverage=46.595; evalue=2.82e-66; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G66230	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.466; coverage=79.211; evalue=1.99e-79	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G61250	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=67.606; coverage=50.896; evalue=1.68e-64	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G28110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.094; coverage=45.878; evalue=8.88e-66	UniProtKB/Swiss-Prot DAT 2026 current_release