Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_004689 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:143560275-143561730 (+) |
| Description | Similar to ARF16: Auxin response factor 16 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_004689 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g30080 |
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | No verified direct reference in this release |
At2g28350 |
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os06g0685700 |
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | No verified direct reference in this release |
Os10g0479900 |
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | No verified direct reference in this release |
Os04g0519700 |
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007389 | pattern specification process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009733 | response to auxin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009734 | auxin-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009738 | abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.0; coverage=33.113; evalue=2.61e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009743 | response to carbohydrate | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.0; coverage=33.113; evalue=2.61e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010154 | fruit development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.0; coverage=33.113; evalue=2.61e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031540 | regulation of anthocyanin biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.0; coverage=33.113; evalue=2.61e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048366 | leaf development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.0; coverage=33.113; evalue=2.61e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048441 | petal development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.0; coverage=33.113; evalue=2.61e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048442 | sepal development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.0; coverage=33.113; evalue=2.61e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048589 | developmental growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.0; coverage=33.113; evalue=2.61e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048829 | root cap development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035198 | miRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G28350 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.0; coverage=33.113; evalue=2.61e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G30080 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=41.722; evalue=2.27e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0519700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.0; coverage=33.113; evalue=2.31e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os06g0685700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.0; coverage=33.113; evalue=3.78e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os10g0479900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.0; coverage=33.113; evalue=7.86e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release |