Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_004241 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:130755879-130763146 (-) |
| Description | Similar to MED13: Mediator of RNA polymerase II transcription subunit 13 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_004241 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 24 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g55325 |
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.105; coverage=4.139; evalue=7.68e-13; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.217; coverage=109.641; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.892; coverage=4.031; evalue=9.15e-14; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006367 | transcription initiation at RNA polymerase II promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.667; coverage=4.085; evalue=9.67e-14; UniProt GO evidence=ISS:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006935 | chemotaxis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.892; coverage=4.031; evalue=9.15e-14; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010468 | regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.892; coverage=4.031; evalue=9.15e-14; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040034 | regulation of development, heterochronic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.217; coverage=109.641; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042632 | cholesterol homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.105; coverage=4.139; evalue=7.68e-13; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045165 | cell fate commitment | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.667; coverage=4.085; evalue=9.67e-14; UniProt GO evidence=IGI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.105; coverage=4.139; evalue=7.68e-13; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.217; coverage=109.641; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048870 | cell motility | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.892; coverage=4.031; evalue=9.15e-14; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060261 | positive regulation of transcription initiation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.105; coverage=4.139; evalue=7.68e-13; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070328 | triglyceride homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.105; coverage=4.139; evalue=7.68e-13; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090213 | regulation of radial pattern formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.217; coverage=109.641; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090263 | positive regulation of canonical Wnt signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.667; coverage=4.085; evalue=9.67e-14; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.217; coverage=109.641; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.667; coverage=4.085; evalue=9.67e-14; UniProt GO evidence=HDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016592 | mediator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.217; coverage=109.641; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070847 | core mediator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.667; coverage=4.085; evalue=9.67e-14; UniProt GO evidence=IPI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990508 | CKM complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.667; coverage=4.085; evalue=9.67e-14; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003712 | transcription coregulator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.892; coverage=4.031; evalue=9.15e-14; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.217; coverage=109.641; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046966 | nuclear thyroid hormone receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.105; coverage=4.139; evalue=7.68e-13; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G55325 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.217; coverage=109.641; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0282375 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.892; coverage=4.031; evalue=9.15e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG9936 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.667; coverage=4.085; evalue=9.67e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:564707 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.737; coverage=4.139; evalue=4.55e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:327987 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.105; coverage=4.139; evalue=7.68e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release |