Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_003588 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:86847925-86853658 (+) |
| Description | Similar to PTM: DDT domain-containing protein PTM (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_003588 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 35 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g35210 |
Membrane-bound transcription factor required for the plastid-to-nucleus retrograde signaling. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.34; coverage=23.566; evalue=6.54e-14; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IDA:HGNC-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IMP:HGNC-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010019 | chloroplast-nucleus signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010468 | regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034728 | nucleosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045824 | negative regulation of innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IGI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IMP:HGNC-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046426 | negative regulation of receptor signaling pathway via JAK-STAT | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048515 | spermatid differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990090 | cellular response to nerve growth factor stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009707 | chloroplast outer membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009941 | chloroplast envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016589 | NURF complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031010 | ISWI-type complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044297 | cell body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070062 | extracellular exosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IGI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016922 | nuclear receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IPI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22; UniProt GO evidence=IDA:HGNC-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140002 | histone H3K4me3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G35210 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.349; coverage=49.274; evalue=1.38e-69 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cel:CELE_F26H11.2 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.34; coverage=23.566; evalue=6.54e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG32346 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.759; coverage=21.493; evalue=6.81e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:2186 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.769; coverage=22.46; evalue=1.83e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release |