RubberDandelionOmics 橡胶草多组学网站
更多
转录组数据查询 注释 橡胶合成 转录因子预测 靶基因 蛋白关联网络 重测序 工具 下载
ZH EN

本页使用教程

基因注释

展示当前基因的功能描述、GO/KEGG 注释及分物种同源证据。命中结果按查询版本、序列来源和比对证据分层显示。

示例 TkA01G624900 LXL04_000258 文献示例 LXL04_039733 TkAUNG001940

查询结果

下载当前结果

基因 IDLXL04_003511
当前查询版本OH1004
位置Chr01:81626454-81628780 (-)
描述Similar to RIE1: E3 ubiquitin protein ligase RIE1 (Arabidopsis thaliana OX%3D3702)
注释来源组装GCA_047496595.1_OSU_TarKok_2.0

功能注释来源：OH1004 · LXL04_003511 · GCA_047496595.1_OSU_TarKok_2.0。

当前查询返回来自 OH1004 注释条目的 15 条 GO 注释和 5 条 KEGG 基因交叉引用；只下载当前查询结果，不据此推断 KEGG 通路成员。

拟南芥 / 水稻参考基因与文献

文献对应拟南芥或水稻参考基因；橡胶草的功能关联来自当前参考组装的蛋白序列比对。

下载当前基因文献

拟南芥

参考基因 ID可能功能对应论文 / DOI
At2g01735 可能是胚胎发育所需的 E3 泛素蛋白连接酶。
A RING-H2 zinc-finger protein gene RIE1 is essential for seed development in Arabidopsis.2003 · DOI: 10.1023/b:plan.0000009256.01620.a6
At4g11680 在体外介导E2依赖的蛋白泛素化。 暂无已核实直接文献
At1g12760 在体外介导E2依赖的蛋白泛素化。 暂无已核实直接文献
At1g63170 介导 E2 依赖性蛋白质泛素化。 暂无已核实直接文献
At2g01730 切割和多聚腺苷酸化特异因子（CPSF）复合体的组成部分，在前mRNA 3'端形成中起关键作用，识别AAUAAA信号序列，并与多聚腺苷酸聚合酶及其他因子相互作用，从而实现3'端切割和多聚腺苷酸添加。
Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies.2009 · DOI: 10.1104/pp.109.142729

水稻

当前来源表未检出该物种的同源命中。

GO / KEGG

以下 GO/KEGG 注释源自上述 OH1004 注释条目，保留原始同源转移证据及覆盖度；其来源物种范围与拟南芥/水稻直接比对表不同。

类型ID名称命名空间证据来源
GOGO:0006397mRNA processing生物过程Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=43.537; 覆盖度=27.323; E 值=3.44e-24; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006511ubiquitin-dependent protein catabolic process生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=61.694; 覆盖度=46.097; E 值=1.39e-102; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009793embryo development ending in seed dormancy生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=61.694; 覆盖度=46.097; E 值=1.39e-102; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010197polar nucleus fusion生物过程Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=43.537; 覆盖度=27.323; E 值=3.44e-24; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016180snRNA processing生物过程Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=43.537; 覆盖度=27.323; E 值=3.44e-24; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitination生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=61.694; 覆盖度=46.097; E 值=1.39e-102; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuole细胞组分Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=51.2; 覆盖度=46.468; E 值=2.41e-68; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleus细胞组分Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=51.2; 覆盖度=46.468; E 值=2.41e-68; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplast细胞组分Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=54.751; 覆盖度=41.078; E 值=4.27e-64; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membrane细胞组分Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=61.694; 覆盖度=46.097; E 值=1.39e-102; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004521RNA endonuclease activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=43.537; 覆盖度=27.323; E 值=3.44e-24; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=54.751; 覆盖度=41.078; E 值=4.27e-64; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion binding分子功能Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=61.694; 覆盖度=46.097; E 值=1.39e-102; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016787hydrolase activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=43.537; 覆盖度=27.323; E 值=3.44e-24; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=61.694; 覆盖度=46.097; E 值=1.39e-102; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G12760KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=3; 一致性=54.751; 覆盖度=41.078; E 值=4.27e-64UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G63170KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=4; 一致性=48.708; 覆盖度=50.372; E 值=1.36e-60UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G01730KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=5; 一致性=43.537; 覆盖度=27.323; E 值=3.44e-24UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G01735KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=1; 一致性=61.694; 覆盖度=46.097; E 值=1.39e-102UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G11680KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=2; 一致性=51.2; 覆盖度=46.468; E 值=2.41e-68UniProtKB/Swiss-Prot DAT 2026 current_release