Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_002100`
Query reference	OH1004
Location	Chr01:41649779-41652888 (+)
Description	Similar to ROPGEF12: Rop guanine nucleotide exchange factor 12 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002100 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79860`	Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP.	A distinct mechanism regulating a pollen-specific guanine nucleotide exchange factor for the small GTPase Rop in Arabidopsis thaliana.2007 · DOI: 10.1073/pnas.0705874104
`At4g13240`	Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP.	No verified direct reference in this release
`At3g24620`	Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP.	Structural evidence for a common intermediate in small G protein-GEF reactions.2007 · DOI: 10.1016/j.molcel.2006.11.023
`At1g52240`	Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP.	A small GTPase activator protein interacts with cytoplasmic phytochromes in regulating root development.2010 · DOI: 10.1074/jbc.m110.133710
`At5g19560`	Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.914; coverage=84.915; evalue=3.97e-178; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009860	pollen tube growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.914; coverage=84.915; evalue=3.97e-178; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.236; coverage=85.401; evalue=1.63e-169; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080092	regulation of pollen tube growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.914; coverage=84.915; evalue=3.97e-178; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080147	root hair cell development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.236; coverage=85.401; evalue=1.63e-169; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.914; coverage=84.915; evalue=3.97e-178; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.914; coverage=84.915; evalue=3.97e-178; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.51; coverage=87.348; evalue=1.93e-157; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.914; coverage=84.915; evalue=3.97e-178; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.954; coverage=94.647; evalue=2.51e-172; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016324	apical plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.51; coverage=87.348; evalue=1.93e-157; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090406	pollen tube	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.914; coverage=84.915; evalue=3.97e-178; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005085	guanyl-nucleotide exchange factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.914; coverage=84.915; evalue=3.97e-178; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.042; coverage=86.375; evalue=4.91e-172; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G52240	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.236; coverage=85.401; evalue=1.63e-169	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G79860	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.914; coverage=84.915; evalue=3.97e-178	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G24620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.042; coverage=86.375; evalue=4.91e-172	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G13240	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.954; coverage=94.647; evalue=2.51e-172	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G19560	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.51; coverage=87.348; evalue=1.93e-157	UniProtKB/Swiss-Prot DAT 2026 current_release