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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_000896
Query referenceOH1004
LocationChr01:16402244-16406039 (-)
DescriptionSimilar to prpf39: Pre-mRNA-processing factor 39 (Danio rerio OX%3D7955)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000896 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 9 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g04080 Involved in pre-mRNA splicing.
The Arabidopsis thaliana AT PRP39-1 gene, encoding a tetratricopeptide repeat protein with similarity to the yeast pre-mRNA processing protein PRP39, affects flowering time.2007 · DOI: 10.1007/s00299-007-0336-5
A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a.2017 · DOI: 10.1534/genetics.117.300149
At5g46400 Involved in pre-mRNA splicing. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000395mRNA 5'-splice site recognitionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.425; coverage=92.94; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.425; coverage=92.94; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048510regulation of timing of transition from vegetative to reproductive phaseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.425; coverage=92.94; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048573photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.425; coverage=92.94; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000243commitment complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.425; coverage=92.94; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.425; coverage=92.94; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005685U1 snRNPCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.425; coverage=92.94; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071004U2-type prespliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.425; coverage=92.94; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030627pre-mRNA 5'-splice site bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.286; coverage=73.556; evalue=2.03e-76; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G04080KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.425; coverage=92.94; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G46400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.264; coverage=68.036; evalue=3.48e-132UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdre:368864KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.898; coverage=80.488; evalue=9.1e-78UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:55015KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.688; coverage=80.616; evalue=1.58e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:734636KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.286; coverage=73.556; evalue=2.03e-76UniProtKB/Swiss-Prot DAT 2026 current_release