Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA08G424910`
Query reference	TK1151
Location	Chr08:107929068-107936923 (-)
Description	Similar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_010080 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g04890`	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'.	Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis.2003 · DOI: 10.1242/dev.00292 Mutations in epidermis-specific HD-ZIP IV genes affect floral organ identity in Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12211 Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element.2014 · DOI: 10.1105/tpc.114.127647
`At4g21750`	Probable transcription factor involved in cell specification and pattern formation during embryogenesis.	Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein.2001 · DOI: 10.1046/j.1365-313x.2001.01047.x Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis.2003 · DOI: 10.1242/dev.00292 Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element.2014 · DOI: 10.1105/tpc.114.127647
`At1g05230`	Probable transcription factor (By similarity).	Mutations in epidermis-specific HD-ZIP IV genes affect floral organ identity in Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12211

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0627000`	Probable transcription factor.	No verified direct reference in this release
`Os08g0187500`	Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis.	Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis.2002 · DOI: 10.1046/j.1365-313x.2002.01234.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009845	seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010029	regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010090	trichome morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.098; coverage=101.377; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010214	seed coat development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.098; coverage=101.377; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048354	mucilage biosynthetic process involved in seed coat development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.098; coverage=101.377; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048497	maintenance of floral organ identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048825	cotyledon development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0052541	plant-type cell wall cellulose metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.098; coverage=101.377; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090627	plant epidermal cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000033	regulation of seed dormancy process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000144	positive regulation of DNA-templated transcription initiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.098; coverage=101.377; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008289	lipid binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.836; coverage=104.408; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G05230	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.098; coverage=101.377; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G04890	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.973; coverage=101.791; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G21750	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.836; coverage=104.408; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0627000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=77.98; coverage=98.209; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os08g0187500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.479; coverage=97.245; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release