Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA08G079800 |
|---|---|
| Query reference | TK1151 |
| Location | Chr08:20484216-20484912 (-) |
| Description | Similar to Prpf39: Pre-mRNA-processing factor 39 (Mus musculus OX%3D10090) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_018717 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 11 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g04080 |
Involved in pre-mRNA splicing. | |
At5g46400 |
Involved in pre-mRNA splicing. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.45; coverage=46.781; evalue=2.32e-22; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000395 | mRNA 5'-splice site recognition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.07; coverage=48.927; evalue=7.24e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.45; coverage=46.781; evalue=2.32e-22; UniProt GO evidence=ISS:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.07; coverage=48.927; evalue=7.24e-60; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.07; coverage=48.927; evalue=7.24e-60; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048573 | photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.07; coverage=48.927; evalue=7.24e-60; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000243 | commitment complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.07; coverage=48.927; evalue=7.24e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.07; coverage=48.927; evalue=7.24e-60; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005685 | U1 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.07; coverage=48.927; evalue=7.24e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071004 | U2-type prespliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.07; coverage=48.927; evalue=7.24e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030627 | pre-mRNA 5'-splice site binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.81; coverage=45.064; evalue=6.43e-23; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G04080 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.07; coverage=48.927; evalue=7.24e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G46400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.294; coverage=46.781; evalue=5.08e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG1646 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.45; coverage=46.781; evalue=2.32e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:734636 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.81; coverage=45.064; evalue=6.43e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release |